RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 EOGTQ5NDL2 527 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 EGFLAMQ63HQ2 1017 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 RASSF3Q86WH2 238 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 CPXM2Q8N436 756 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 WDTC1Q8N5D0 677 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 MDGA1Q8NFP4 955 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 KCNV2Q8TDN2 545 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 ACOX2Q99424 681 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 DNAJC12Q9UKB3 198 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 CLEC4EQ9ULY5 219 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 PLXND1Q9Y4D7 1925 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 PNMA6AP0CW24 399 aaPredicted RBP19.18■□□□□ 0.66
CLN3-202ENST00000355477 WASP42768 502 aa19.18■□□□□ 0.66
CLN3-202ENST00000355477 HARS2P49590 506 aaKnown RBP19.18■□□□□ 0.66
CLN3-202ENST00000355477 TCP11X2Q5H9J9 407 aa19.18■□□□□ 0.66
CLN3-202ENST00000355477 NUDT18Q6ZVK8 323 aa19.18■□□□□ 0.66
CLN3-202ENST00000355477 GPR161Q8N6U8 529 aaKnown RBP19.18■□□□□ 0.66
CLN3-202ENST00000355477 STK32AQ8WU08 396 aa19.18■□□□□ 0.66
CLN3-202ENST00000355477 ZC3H10Q96K80 434 aaKnown RBP19.18■□□□□ 0.66
CLN3-202ENST00000355477 NFE2L3Q9Y4A8 694 aa19.18■□□□□ 0.66
CLN3-202ENST00000355477 E5RJQ4 531 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 PAPSS1O43252 624 aaPredicted RBP19.17■□□□□ 0.66
CLN3-202ENST00000355477 TSPAN3O60637 253 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 IGLV3-27P01718 113 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 CLCN1P35523 988 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 ACADSBP45954 432 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 ID4P47928 161 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 PLK5Q496M5 336 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 TMEM110Q86TL2 294 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 ENOX1Q8TC92 643 aaKnown RBP19.17■□□□□ 0.66
CLN3-202ENST00000355477 RMDN1Q96DB5 314 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 DUSP15Q9H1R2 295 aaPredicted RBP19.17■□□□□ 0.66
CLN3-202ENST00000355477 TJP2Q9UDY2 1190 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 STOML2Q9UJZ1 356 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 USP18Q9UMW8 372 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 NAALADL1Q9UQQ1 740 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 SLC27A6Q9Y2P4 619 aa19.17■□□□□ 0.66
CLN3-202ENST00000355477 GFRA2O00451 464 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 CYBBP04839 570 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 NCAM1P13591 858 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 NTSR1P30989 418 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 GEN1Q17RS7 908 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 SYPL2Q5VXT5 272 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 SLC47A2Q86VL8 602 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 PASD1Q8IV76 773 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 OLIG1Q8TAK6 271 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 DDI1Q8WTU0 396 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 GOLGA1Q92805 767 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 PIWIL1Q96J94 861 aaKnown RBP19.16■□□□□ 0.66
CLN3-202ENST00000355477 ARRDC1-AS1Q9H2J1 176 aa19.16■□□□□ 0.66
CLN3-202ENST00000355477 A0A1W2PQF6 199 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 TCRBV21S2A2A0A5A6 115 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 PES1O00541 588 aaKnown RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 LRP3O75074 770 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 ALDH1A2O94788 518 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 EEF1GP26641 437 aaKnown RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 TBX4P57082 545 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 PTK2Q05397 1052 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 PDCLQ13371 301 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 CCDC6Q16204 474 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 USP39Q53GS9 565 aaKnown RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 ADGRF1Q5T601 910 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 CDKAL1Q5VV42 579 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 C11orf57Q6ZUT1 292 aaPredicted RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 TRMT11Q7Z4G4 463 aaKnown RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 FAM71AQ8IYT1 594 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 FRMD1Q8N878 549 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 ADAM32Q8TC27 787 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 DQX1Q8TE96 717 aaKnown RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 HMGB4Q8WW32 186 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 FAM149B1Q96BN6 582 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 ERLEC1Q96DZ1 483 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 LOXL4Q96JB6 756 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 CD248Q9HCU0 757 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 POLMQ9NP87 494 aaPredicted RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 SEMA4GQ9NTN9 838 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 TAB2Q9NYJ8 693 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 PCDHGC3Q9UN70 934 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.15■□□□□ 0.66
CLN3-202ENST00000355477 SPTBN2O15020 2390 aa19.15■□□□□ 0.66
CLN3-202ENST00000355477 TNRC6BQ9UPQ9 1833 aaKnown RBP19.14■□□□□ 0.65
CLN3-202ENST00000355477 GOLGA6L7A0A1B0GV03 622 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 WASH3PC4AMC7 463 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 GOLGA6L22H0YM25 854 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 EPN2O95208 641 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 LATS1O95835 1130 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 HOXB2P14652 356 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 BCKDHBP21953 392 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 HOXD9P28356 352 aaPredicted RBP19.14■□□□□ 0.65
CLN3-202ENST00000355477 PI4KAP42356 2102 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 SGSHP51688 502 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 RING1Q06587 406 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 DRAP1Q14919 205 aaPredicted RBP19.14■□□□□ 0.65
CLN3-202ENST00000355477 TAF5Q15542 800 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 CSRP2Q16527 193 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 RSPO4Q2I0M5 234 aaPredicted RBP19.14■□□□□ 0.65
CLN3-202ENST00000355477 MPPE1Q53F39 396 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 KLHDC7AQ5VTJ3 777 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 KIAA1211LQ6NV74 962 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 CHPFQ8IZ52 775 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms