RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 HMGXB4Q9UGU5 601 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 DCTN4Q9UJW0 460 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 NME7Q9Y5B8 376 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 PODXLO00592 558 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 CFHP08603 1231 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 CLCNKBP51801 687 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 CCL23P55773 120 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 HPCAP84074 193 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 CENPCQ03188 943 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 DSC1Q08554 894 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 TUSC3Q13454 348 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 MRPL45Q9BRJ2 306 aaKnown RBP10.48□□□□□ -0.73
SYNE1-203ENST00000354674 TMEM39AQ9NV64 488 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 KIAA1257Q9ULG3 409 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 MAP3K7O43318 606 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 FTLP02792 175 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 GSTT2P0CG29 244 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 GSTT2BP0CG30 244 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 MMP13P45452 471 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 NDST1P52848 882 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 MTTPP55157 894 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 C3orf58Q8NDZ4 430 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 FBXO25Q8TCJ0 367 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 RSPH1Q8WYR4 309 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 TLCD1Q96CP7 247 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 PITPNM3Q9BZ71 974 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 LHX5Q9H2C1 402 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 LIN28AQ9H9Z2 209 aaKnown RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 PCDH18Q9HCL0 1135 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 KANSL3Q9P2N6 904 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 RABL2BQ9UNT1 228 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 SRRM3A6NNA2 597 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 THAP12O43422 761 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 LSM8O95777 96 aaKnown RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 TIMP1P01033 207 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 GSTA2P09210 222 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 WARSP23381 471 aaKnown RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 IGFBP6P24592 240 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 PMS2P54278 862 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 HADHBP55084 474 aaKnown RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 NOMO3P69849 1222 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 MPP2Q14168 576 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 SETDB1Q15047 1291 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 ACSBG2Q5FVE4 666 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 C1orf228Q6PIY5 440 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 GLB1LQ6UWU2 654 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 RNF169Q8NCN4 708 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 NAT14Q8WUY8 206 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 STMN2Q93045 179 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 TRIM43Q96BQ3 446 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 ZNF518BQ9C0D4 1074 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 ZNF148Q9UQR1 794 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 UTP11Q9Y3A2 253 aaKnown RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 MICAL3Q7RTP6 2002 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 GABRDO14764 452 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 RNASEH1O60930 286 aaKnown RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 SPAG7O75391 227 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 POMCP01189 267 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 VDRP11473 427 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 RASSF2P50749 326 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 ARFIP2P53365 341 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 THOC5Q13769 683 aaKnown RBP10.47□□□□□ -0.73
SYNE1-203ENST00000354674 ZNF394Q53GI3 561 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 MDH1BQ5I0G3 518 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 NOMO2Q5JPE7 1267 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 CGB2Q6NT52 195 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 AADACL2Q6P093 401 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 CNKSR3Q6P9H4 555 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 SLC2A7Q6PXP3 512 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 CRYBG2Q8N1P7 616 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 SMYD1Q8NB12 490 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 HIPK4Q8NE63 616 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 CASD1Q96PB1 797 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 LRRC37BQ96QE4 947 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 PAAF1Q9BRP4 392 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 CENPKQ9BS16 269 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 NT5C1AQ9BXI3 368 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 NDEL1Q9GZM8 345 aa10.47□□□□□ -0.73
SYNE1-203ENST00000354674 TET1Q8NFU7 2136 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 TSC2P49815 1807 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 MED7O43513 233 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 PDE5AO76074 875 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 CYP1A2P05177 515 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 FGFR1P11362 822 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 ITGB8P26012 769 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 GRIA2P42262 883 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 KPNA1P52294 538 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-203ENST00000354674 ITIH3Q06033 890 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 CD300CQ08708 224 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 PTP4A2Q12974 167 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 PHF13Q86YI8 300 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-203ENST00000354674 COLGALT2Q8IYK4 626 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 WDTC1Q8N5D0 677 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 APPL2Q8NEU8 664 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 SPATA18Q8TC71 538 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 GATA6Q92908 595 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 VCPIP1Q96JH7 1222 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 THAP2Q9H0W7 228 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 SEPT11Q9NVA2 429 aaKnown RBP10.46□□□□□ -0.73
SYNE1-203ENST00000354674 SPO11Q9Y5K1 396 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms