RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 THG1LQ9NWX6 298 aaKnown RBP23.07■■□□□ 1.28
SHMT1-203ENST00000354098 RRN3Q9NYV6 651 aa23.07■■□□□ 1.28
SHMT1-203ENST00000354098 MUTYHQ9UIF7 546 aa23.07■■□□□ 1.28
SHMT1-203ENST00000354098 TFR2Q9UP52 801 aa23.07■■□□□ 1.28
SHMT1-203ENST00000354098 SORCS3Q9UPU3 1222 aa23.07■■□□□ 1.28
SHMT1-203ENST00000354098 SCINQ9Y6U3 715 aa23.07■■□□□ 1.28
SHMT1-203ENST00000354098 SDC4P31431 198 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 MAGEA1P43355 309 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 KPNA1P52294 538 aaPredicted RBP23.06■■□□□ 1.28
SHMT1-203ENST00000354098 CDO1Q16878 200 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 ZC3H12AQ5D1E8 599 aaKnown RBP23.06■■□□□ 1.28
SHMT1-203ENST00000354098 DENND1CQ8IV53 801 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 FAM83CQ9BQN1 747 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 NUP85Q9BW27 656 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 PIGVQ9NUD9 493 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 DUS2Q9NX74 493 aaKnown RBP23.06■■□□□ 1.28
SHMT1-203ENST00000354098 REXO2Q9Y3B8 237 aaKnown RBP23.06■■□□□ 1.28
SHMT1-203ENST00000354098 PCDHA13Q9Y5I0 950 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 CHADO15335 359 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 TMEM253P0C7T8 217 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 GBP1P32455 592 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 TNK2Q07912 1038 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 NNTQ13423 1086 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 SPA17Q15506 151 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 ARHGAP29Q52LW3 1261 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 Q6ZNB5 142 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 BNIPLQ7Z465 357 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 OSCP1Q8WVF1 389 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 BRD9Q9H8M2 597 aa23.06■■□□□ 1.28
SHMT1-203ENST00000354098 MRPL47Q9HD33 250 aaKnown RBP23.06■■□□□ 1.28
SHMT1-203ENST00000354098 LSM7Q9UK45 103 aaKnown RBP23.06■■□□□ 1.28
SHMT1-203ENST00000354098 AGO1Q9UL18 857 aaKnown RBP23.06■■□□□ 1.28
SHMT1-203ENST00000354098 PTPN9P43378 593 aa23.05■■□□□ 1.28
SHMT1-203ENST00000354098 ZNF143P52747 638 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-203ENST00000354098 DEUP1Q05D60 604 aa23.05■■□□□ 1.28
SHMT1-203ENST00000354098 RING1Q06587 406 aa23.05■■□□□ 1.28
SHMT1-203ENST00000354098 ZNF252P-AS1Q0IIN9 211 aa23.05■■□□□ 1.28
SHMT1-203ENST00000354098 C10orf76Q5T2E6 689 aa23.05■■□□□ 1.28
SHMT1-203ENST00000354098 ACRBPQ8NEB7 543 aa23.05■■□□□ 1.28
SHMT1-203ENST00000354098 PGAP3Q96FM1 320 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-203ENST00000354098 EBF3Q9H4W6 596 aa23.05■■□□□ 1.28
SHMT1-203ENST00000354098 ARNTLO00327 626 aa23.04■■□□□ 1.28
SHMT1-203ENST00000354098 CCP110O43303 1012 aa23.04■■□□□ 1.28
SHMT1-203ENST00000354098 ARSAP15289 507 aa23.04■■□□□ 1.28
SHMT1-203ENST00000354098 HARS2P49590 506 aaKnown RBP23.04■■□□□ 1.28
SHMT1-203ENST00000354098 CENPIQ92674 756 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-203ENST00000354098 BTBD6Q96KE9 485 aa23.04■■□□□ 1.28
SHMT1-203ENST00000354098 DESI2Q9BSY9 194 aa23.04■■□□□ 1.28
SHMT1-203ENST00000354098 OTOL1A6NHN0 477 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-203ENST00000354098 ENDOD1O94919 500 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 SRFP11831 508 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 IFNAR2P48551 515 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 CCZ1BP86790 482 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 CCZ1P86791 482 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-203ENST00000354098 EML3Q32P44 896 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 IER5LQ5T953 404 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 ADGRG2Q8IZP9 1017 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 TTC8Q8TAM2 541 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 FAM172AQ8WUF8 416 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 RNF34Q969K3 372 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 DCLK3Q9C098 648 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 OSGEPQ9NPF4 335 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 HPS4Q9NQG7 708 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 GTSE1Q9NYZ3 720 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 CTTNBP2NLQ9P2B4 639 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 XPO7Q9UIA9 1087 aaKnown RBP23.03■■□□□ 1.28
SHMT1-203ENST00000354098 INTUQ9ULD6 942 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 DUSP12Q9UNI6 340 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 RCCD1A6NED2 376 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 MOCS2O96007 188 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-203ENST00000354098 F9P00740 461 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 RDXP35241 583 aaKnown RBP23.03■■□□□ 1.28
SHMT1-203ENST00000354098 CXCR3P49682 368 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 NUGGCQ68CJ6 796 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 UNC45BQ8IWX7 931 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 CCDC112Q8NEF3 446 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 IRF7Q92985 503 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 CNPY3Q9BT09 278 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 ANLNQ9NQW6 1124 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.03■■□□□ 1.28
SHMT1-203ENST00000354098 TBC1D14Q9P2M4 693 aa23.03■■□□□ 1.28
SHMT1-203ENST00000354098 MUC3AQ02505 3323 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 KIF26AQ9ULI4 1882 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-203ENST00000354098 KCNU1A8MYU2 1149 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 PSMA2P25787 234 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 CCR1P32246 355 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 HDAC4P56524 1084 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 PDGFRLQ15198 375 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 STRADAQ7RTN6 431 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 FAM131BQ86XD5 332 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 KIAA1958Q8N8K9 716 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 SLC35G2Q8TBE7 412 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 ZNF564Q8TBZ8 553 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-203ENST00000354098 SLC2A4RGQ9NR83 387 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 TMPRSS4Q9NRS4 437 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 ANAPC7Q9UJX3 599 aa23.02■■□□□ 1.28
SHMT1-203ENST00000354098 GOLGA6L7A0A1B0GV03 622 aa23.01■■□□□ 1.27
SHMT1-203ENST00000354098 I6L893 689 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-203ENST00000354098 SLC9A3R1O14745 358 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-203ENST00000354098 IPO7O95373 1038 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms