RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ATPAF2Q8N5M1 289 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 BCLAF3A2AJT9 711 aaKnown RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF879B4DU55 563 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SUPT3HB4E1H0 165 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 LDOC1O95751 146 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 NCAM1P13591 858 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 PAICSP22234 425 aaKnown RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SLC1A6P48664 564 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ZSWIM7Q19AV6 140 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SMIM5Q71RC9 77 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 GATAD2AQ86YP4 633 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 TMEM132CQ8N3T6 1108 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ZCCHC9Q8N567 271 aaKnown RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 RP9Q8TA86 221 aaKnown RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 RDH11Q8TC12 318 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 BARHL2Q9NY43 387 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SETBP1Q9Y6X0 1596 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 FLT3P36888 993 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ST3GAL1Q11201 340 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SQLEQ14534 574 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 DUOXA2Q1HG44 320 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF507Q8TCN5 953 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 TGFBRAP1Q8WUH2 860 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SPATA7Q9P0W8 599 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 CCDC88CQ9P219 2028 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MAGEB3O15480 346 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 PDE8BO95263 885 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 PIK3CBP42338 1070 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 RIPOR1Q6ZS17 1223 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 RHBDF1Q96CC6 855 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 CCDC177Q9NQR7 707 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-203ENST00000353578 CLN6Q9NWW5 311 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 NAGPAQ9UK23 515 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 TIE1P35590 1138 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 PRELPP51888 382 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 NFIAQ12857 509 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 MMTAG2Q9BU76 263 aaKnown RBP12.91□□□□□ -0.34
COL6A3-203ENST00000353578 PLB1Q6P1J6 1458 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 TBX3O15119 743 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 UGT2B11O75310 529 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 BMP10O95393 424 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 NR3C2P08235 984 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 ZCWPW1Q9H0M4 648 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 PTBP2Q9UKA9 531 aaKnown RBP12.91□□□□□ -0.34
COL6A3-203ENST00000353578 GNA13Q14344 377 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 TBC1D21Q8IYX1 336 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 MAP3K14Q99558 947 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 NDUFS3O75489 264 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 RMDN3Q96TC7 470 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 CPNE1Q99829 537 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 EMILIN2Q9BXX0 1053 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 INPP5FQ9Y2H2 1132 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 MBD5Q9P267 1494 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 ZBTB5O15062 677 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 S100GP29377 79 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 NFX1Q12986 1120 aaKnown RBP12.91□□□□□ -0.34
COL6A3-203ENST00000353578 PHKG1Q16816 387 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 SPATS1Q496A3 300 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 CRTC3Q6UUV7 619 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 PIWIL2Q8TC59 973 aaKnown RBP12.91□□□□□ -0.34
COL6A3-203ENST00000353578 LMCD1Q9NZU5 365 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 MFHAS1Q9Y4C4 1052 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 AP4B1Q9Y6B7 739 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 TPBGLP0DKB5 382 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 ERCC2P18074 760 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 BTN3A2P78410 334 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 SLCO6A1Q86UG4 719 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 FAM160B2Q86V87 743 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 RTKNQ9BST9 563 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF222Q9UK12 451 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 NFYCQ13952 458 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 NT5DC1Q5TFE4 455 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 LCN1P1Q5VSP4 162 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 ANKMY2Q8IV38 441 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 GPD1LQ8N335 351 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 SAMD3Q8N6K7 520 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 RACGAP1Q9H0H5 632 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 RABL2AQ9UBK7 228 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-203ENST00000353578 RABL2BQ9UNT1 228 aa12.91□□□□□ -0.34
COL6A3-203ENST00000353578 E9PBE3 544 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 DNAJB5O75953 348 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 PRCCQ92733 491 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 WDR41Q9HAD4 459 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 CMTM6Q9NX76 183 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 PGDP52209 483 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 EIF4A1P60842 406 aaKnown RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 CDC42EP1Q00587 391 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ITFG1Q8TB96 612 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ELMO2Q96JJ3 720 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 GSDMCQ9BYG8 508 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 REEP1Q9H902 201 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 AAR2Q9Y312 384 aaKnown RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 SYNJ2BP-COX16A0A087WUM0 186 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ASNSP08243 561 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 PAEPP09466 180 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 GJD3Q8N144 294 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 DSN1Q9H410 356 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 COX16Q9P0S2 106 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 EML1O00423 815 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 PHKA2P46019 1235 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms