RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 GLP2RO95838 553 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ABCE1P61221 599 aaKnown RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 C12orf29Q8N999 325 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 DNPEPQ9ULA0 475 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 DUSP11O75319 330 aaKnown RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 TRIM16O95361 564 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 IGFBP4P22692 258 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ICAM3P32942 547 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ARMC6Q6NXE6 501 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 DCLRE1AQ6PJP8 1040 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 KCNT2Q6UVM3 1135 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 REM2Q8IYK8 340 aaPredicted RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 SHC3Q92529 594 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 SPATA16Q9BXB7 569 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 RNF103O00237 685 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 RFC1P35251 1148 aaPredicted RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 BRCC3P46736 316 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 NR2C2P49116 596 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 HDAC4P56524 1084 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 AMPD2Q01433 879 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ZC3H12AQ5D1E8 599 aaKnown RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 LZTR1Q8N653 840 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 CLDN5O00501 218 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 TRUB2O95900 331 aaKnown RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 SFSWAPQ12872 951 aaKnown RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 USP41Q3LFD5 358 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 SDHAF4Q5VUM1 108 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ZSWIM2Q8NEG5 633 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ANLNQ9NQW6 1124 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 RBPJLQ9UBG7 517 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 RNF103-CHMP3A0A140T963 221 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 GLRA3O75311 464 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 LSP1P33241 339 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 CLK2P49760 499 aaKnown RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ERFP50548 548 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 PABPC1LQ4VXU2 614 aaKnown RBP15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ANKRD52Q8NB46 1076 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 LZICQ8WZA0 190 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 C10orf88Q9H8K7 445 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 GOLGA2P5Q9HBQ8 144 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 CDY1Q9Y6F8 540 aa15.32■□□□□ 0.04
COL17A1-201ENST00000353479 ATRNL1Q5VV63 1379 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 SUPT7LO94864 414 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 PGM1P36871 562 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 TEDDM1Q5T9Z0 273 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 MSL3Q8N5Y2 521 aaKnown RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 HSFY1Q96LI6 401 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 C12orf42Q96LP6 360 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 TUBGCP4Q9UGJ1 667 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 MAFBQ9Y5Q3 323 aaPredicted RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 A0A0B4J269 797 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 CLASP2O75122 1294 aaKnown RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 ENO3P13929 434 aaPredicted RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 KDELR1P24390 212 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 FMO1Q01740 532 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 DNAJC3Q13217 504 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 TMEM259Q4ZIN3 620 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 PKN3Q6P5Z2 889 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 CCDC149Q6ZUS6 474 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 NUP93Q8N1F7 819 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 NIFKQ9BYG3 293 aaKnown RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 OR12D3Q9UGF7 316 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 ZNF214Q9UL59 606 aaPredicted RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 KLRG2A4D1S0 409 aaPredicted RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 PCDH8O95206 1070 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 CDH17Q12864 832 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 HIC1Q14526 733 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 MRPL45Q9BRJ2 306 aaKnown RBP15.31■□□□□ 0.04
COL17A1-201ENST00000353479 DCDC2Q9UHG0 476 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 MSRAQ9UJ68 235 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 APOA4P06727 396 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 SEC24CP53992 1094 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 ESRRGP62508 458 aa15.31■□□□□ 0.04
COL17A1-201ENST00000353479 ZSCAN5CA6NGD5 496 aaPredicted RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 DDHD2O94830 711 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ACADMP11310 421 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 MPP3Q13368 585 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 C9orf57Q5W0N0 161 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 AADACL2Q6P093 401 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 KATNAL2Q8IYT4 538 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 CARNS1A5YM72 827 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 KDM1AO60341 852 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 PRKCZQ05513 592 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 HECTD3Q5T447 861 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 SLC26A11Q86WA9 606 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ERLEC1Q96DZ1 483 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 CORO1BQ9BR76 489 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 MRPL1Q9BYD6 325 aaKnown RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 BRD8Q9H0E9 1235 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 BMPR2Q13873 1038 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 RRP1BQ14684 758 aaKnown RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 LRRC52Q8N7C0 313 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 BAP1Q92560 729 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ERP27Q96DN0 273 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ZCWPW1Q9H0M4 648 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 DNALI1O14645 258 aaPredicted RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 CHUKO15111 745 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 CYP1A2P05177 515 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ELK3P41970 407 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ZNF143P52747 638 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms