RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TBX4P57082 545 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 FAM72AQ5TYM5 149 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 TRIM68Q6AZZ1 485 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 FAM72DQ6L9T8 149 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 CES5AQ6NT32 575 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 C1orf228Q6PIY5 440 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 NT5DC3Q86UY8 548 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 FAM72BQ86X60 149 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 HOMEZQ8IX15 550 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 KLHL7Q8IXQ5 586 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 NAT16Q8N8M0 369 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.57□□□□□ -0.88
USP4-202ENST00000351842 CELF6Q96J87 481 aaKnown RBP9.57□□□□□ -0.88
USP4-202ENST00000351842 SNRNP25Q9BV90 132 aaKnown RBP9.57□□□□□ -0.88
USP4-202ENST00000351842 SLC46A2Q9BY10 475 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 ZDHHC4Q9NPG8 344 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 ABCC13Q9NSE7 274 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 CFAP97Q9P2B7 532 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 NENFQ9UMX5 172 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 TSC2P49815 1807 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 TCRBV7S2A1N4TA0A589 114 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 BNIP3LO60238 219 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 PRAMEF12O95522 483 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 FGGP02679 453 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 PYGMP11217 842 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 PTPN2P17706 415 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 CREMQ03060 361 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 MTM1Q13496 603 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 GRM2Q14416 872 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 DUSP6Q16828 381 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 HADHQ16836 314 aaKnown RBP9.57□□□□□ -0.88
USP4-202ENST00000351842 BHLHA9Q7RTU4 235 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 CHSY1Q86X52 802 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 RFX6Q8HWS3 928 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 SHKBP1Q8TBC3 707 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 KCTD13Q8WZ19 329 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 TSC1Q92574 1164 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 VCPIP1Q96JH7 1222 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 CEP41Q9BYV8 373 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.57□□□□□ -0.88
USP4-202ENST00000351842 AP4E1Q9UPM8 1137 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 SCML2Q9UQR0 700 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 SPEGQ15772 3267 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 DPYSL4O14531 572 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 PJA2O43164 708 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 GOT1P17174 413 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 EPHB2P29323 1055 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 LRIT3Q3SXY7 679 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 SLC25A52Q3SY17 297 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 RAB41Q5JT25 222 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ZC3H18Q86VM9 953 aaKnown RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 ARID3BQ8IVW6 561 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 STK32AQ8WU08 396 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 DEPDC1BQ8WUY9 529 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 AVENQ9NQS1 362 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 FAM53CQ9NYF3 392 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 IRAK3Q9Y616 596 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 WNT6Q9Y6F9 365 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 I6L893 689 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 KIF2AO00139 706 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 SART1O43290 800 aaKnown RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 ENDOD1O94919 500 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 CORO1AP31146 461 aaKnown RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 GABRB2P47870 512 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 NRLP54845 237 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ZXDBP98169 803 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ADCY2Q08462 1091 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 MFSD7Q6UXD7 560 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 NPNTQ6UXI9 565 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ANKS1BQ7Z6G8 1248 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 TMEM150AQ86TG1 271 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 UBL4BQ8N7F7 174 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 LRRC57Q8N9N7 239 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 LRRN4CLQ8ND94 238 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ZSCAN18Q8TBC5 510 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 C1orf54Q8WWF1 131 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 RPRD1AQ96P16 312 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 KXD1Q9BQD3 176 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 PRKD2Q9BZL6 878 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 TRIM31Q9BZY9 425 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 SH3BP1Q9Y3L3 701 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 SAR1BQ9Y6B6 198 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 USP3Q9Y6I4 520 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 NCANO14594 1321 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 PAGE1O75459 146 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ZRANB2O95218 330 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP4-202ENST00000351842 AMPD1P23109 780 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 IRAK1P51617 712 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 RPS24P62847 133 aaKnown RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 SMARCB1Q12824 385 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 PIGHQ14442 188 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 TRIP13Q15645 432 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 LONRF2Q1L5Z9 754 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ANO4Q32M45 955 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ATAT1Q5SQI0 421 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 SYCE2Q6PIF2 218 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 SLFN11Q7Z7L1 901 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 PRUNE1Q86TP1 453 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 TP53INP2Q8IXH6 220 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 SYCE1Q8N0S2 351 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms