RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 PCDH12Q9NPG4 1184 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 PLA2G6O60733 806 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 RBP3P10745 1247 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 DBTP11182 482 aaKnown RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 POLNQ7Z5Q5 900 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 HPS3Q969F9 1004 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 ZNF184Q99676 751 aaPredicted RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 SEPT5Q99719 369 aaPredicted RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 CINPQ9BW66 212 aaPredicted RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 ISCUQ9H1K1 167 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 RSPH9Q9H1X1 276 aaPredicted RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 SLC34A1Q06495 639 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 GRB14Q14449 540 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 NAPEPLDQ6IQ20 393 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 STRA8Q7Z7C7 330 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 FNDC5Q8NAU1 212 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 ZNF560Q96MR9 790 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 BTBD9Q96Q07 612 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 LNPEPQ9UIQ6 1025 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 A0A1W2PP64 1363 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 PPEF1O14829 653 aaPredicted RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 COL23A1Q86Y22 540 aaPredicted RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 FAM81AQ8TBF8 368 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 NEK7Q8TDX7 302 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 MYLPFQ96A32 169 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 ACOX2Q99424 681 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 RACGAP1Q9H0H5 632 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 CRISPLD1Q9H336 500 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 TMEM5Q9Y2B1 443 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 HBS1LQ9Y450 684 aaKnown RBP13.15□□□□□ -0.3
USP47-202ENST00000339865 XDHP47989 1333 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 NPHP3-ACAD11A0A0J9YXS1 232 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 ZFP1Q6P2D0 407 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 HIPK1Q86Z02 1210 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 SPATA33Q96N06 139 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 UGT2B28Q9BY64 529 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 PIK3C2GO75747 1445 aa13.15□□□□□ -0.3
USP47-202ENST00000339865 OPLAHO14841 1288 aa13.15□□□□□ -0.31
USP47-202ENST00000339865 ANXA6P08133 673 aa13.15□□□□□ -0.31
USP47-202ENST00000339865 PTPN4P29074 926 aa13.15□□□□□ -0.31
USP47-202ENST00000339865 NCOA4Q13772 614 aa13.15□□□□□ -0.31
USP47-202ENST00000339865 STARD3Q14849 445 aa13.15□□□□□ -0.31
USP47-202ENST00000339865 CRNNQ9UBG3 495 aaPredicted RBP13.15□□□□□ -0.31
USP47-202ENST00000339865 C2CD2Q9Y426 696 aa13.15□□□□□ -0.31
USP47-202ENST00000339865 SH3D21A4FU49 640 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 TMEM114B3SHH9 223 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 PLOD2O00469 737 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 P4HBP07237 508 aaKnown RBP13.14□□□□□ -0.31
USP47-202ENST00000339865 FOSL1P15407 271 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 TNNI3P19429 210 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 COMTP21964 271 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 WEE1P30291 646 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 SPIRE1Q08AE8 756 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 IL18R1Q13478 541 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 BHLHB9Q6PI77 547 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 DNAJC14Q6Y2X3 702 aaPredicted RBP13.14□□□□□ -0.31
USP47-202ENST00000339865 MARCH7Q9H992 704 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 WDR41Q9HAD4 459 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 PMF1-BGLAPU3KQ54 211 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 HIST1H2ABP04908 130 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 MAGP20916 626 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 VBP1P61758 197 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 MRNIPQ6NTE8 343 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 HIST3H2AQ7L7L0 130 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 RAB11FIP2Q7L804 512 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 RTKN2Q8IZC4 609 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 ZNF655Q8N720 491 aaPredicted RBP13.14□□□□□ -0.31
USP47-202ENST00000339865 MAGEE2Q8TD90 523 aaPredicted RBP13.14□□□□□ -0.31
USP47-202ENST00000339865 PYDC1Q8WXC3 89 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 HIST1H2ACQ93077 130 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 ACSF2Q96CM8 615 aaPredicted RBP13.14□□□□□ -0.31
USP47-202ENST00000339865 RSAD1Q9HA92 442 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.14□□□□□ -0.31
USP47-202ENST00000339865 CLEC4AQ9UMR7 237 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 DYRK1BQ9Y463 629 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 PCDHB7Q9Y5E2 793 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 SNX9Q9Y5X1 595 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 SLC2A4P14672 509 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 ATP5F1P24539 256 aaPredicted RBP13.14□□□□□ -0.31
USP47-202ENST00000339865 CBX3Q13185 183 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 HTRA1Q92743 480 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 VPS45Q9NRW7 570 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 A0A1W2PQC6 194 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 HALP42357 657 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.14□□□□□ -0.31
USP47-202ENST00000339865 CEP68Q76N32 757 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 DHFR2Q86XF0 187 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 EHD1Q9H4M9 534 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 RAD54BQ9Y620 910 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 GJA1P17302 382 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 MSR1P21757 451 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 SLC1A6P48664 564 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 ERO1BQ86YB8 467 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 WRNIP1Q96S55 665 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 PIN4Q9Y237 131 aaKnown RBP13.14□□□□□ -0.31
USP47-202ENST00000339865 ICE1Q9Y2F5 2266 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 UGGT2Q9NYU1 1516 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 LOC110117498-PIK3R3F6TDL0 507 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 MDM4O15151 490 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 LYNP07948 512 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms