RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 NR6A1Q15406 480 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 KBTBD12Q3ZCT8 623 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 KCNT1Q5JUK3 1230 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 KRT35Q92764 455 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ANKZF1Q9H8Y5 726 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 DKK3Q9UBP4 350 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 PPP1R3GB7ZBB8 358 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ASS1P00966 412 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 PTPN4P29074 926 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 CYP4F2P78329 520 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 CYP4F3Q08477 520 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 STX12Q86Y82 276 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZNF184Q99676 751 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 EFR3BQ9Y2G0 817 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 SMIM31A0A1B0GVY4 71 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZSCAN5CA6NGD5 496 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 FCHO2Q0JRZ9 810 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZNF177Q13360 481 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 FBXO36Q8NEA4 188 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 VPS37AQ8NEZ2 397 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 OR6Y1Q8NGX8 325 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZNF483Q8TF39 744 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 SOAT2O75908 522 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 GUCA1AP43080 201 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZNF157P51786 506 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 CDC73Q6P1J9 531 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 BTN2A1Q7KYR7 527 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 DHFR2Q86XF0 187 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 TMEM39BQ9GZU3 492 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZC3H11AO75152 810 aaKnown RBP eCLIP8.1□□□□□ -1.11
CIITA-201ENST00000324288 KHDRBS3O75525 346 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 SASH3O75995 380 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 NOS3P29474 1203 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 EFEMP1Q12805 493 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 MAPK7Q13164 816 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 SV2CQ496J9 727 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 PCDH12Q9NPG4 1184 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 DOK6Q6PKX4 331 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 EXD1Q8NHP7 514 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 AGAP11Q8TF27 550 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 DPP3Q9NY33 737 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 CLEC4AQ9UMR7 237 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 NCAPD2Q15021 1401 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 FOXN3O00409 490 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 CCNG1P51959 295 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 PDK3Q15120 406 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 PREPLQ4J6C6 727 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 FAM98BQ52LJ0 330 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 C16orf46Q6P387 395 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 KLHL32Q96NJ5 620 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 POP1Q99575 1024 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 MTMR12Q9C0I1 747 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 NT5MQ9NPB1 228 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 TMEM138Q9NPI0 162 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 RRN3P2A6NIE6 340 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 CASP4P49662 377 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 GRIK3Q13003 919 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 KRT74Q7RTS7 529 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 HDAC7Q8WUI4 952 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 IL18RAPO95256 599 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 NDUFB10O96000 172 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 TAL1P17542 331 aaPredicted RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 CEBPGP53567 150 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 BPIFB6Q8NFQ5 453 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 SIPA1Q96FS4 1042 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 KRCC1Q9NPI7 259 aaPredicted RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 PLEKHG2Q9H7P9 1386 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 PTPRZ1P23471 2315 aaPredicted RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 FAM47E-STBD1D6RA91 191 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 SPAG6O75602 509 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 FGFR1P11362 822 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 ACAD10Q6JQN1 1059 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 EPS8L2Q9H6S3 715 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 ZNF180Q9UJW8 692 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 TELO2Q9Y4R8 837 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 CAPN6Q9Y6Q1 641 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 M0QYT0 321 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 PDXKO00764 312 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 CPA3P15088 417 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 AP3M2P53677 418 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 TDRD10Q5VZ19 366 aaKnown RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 SLC20A1Q8WUM9 679 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 ACOX2Q99424 681 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 TARS2Q9BW92 718 aaKnown RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 CDC42EP4Q9H3Q1 356 aaKnown RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 RPRD1BQ9NQG5 326 aaKnown RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 SLC35C2Q9NQQ7 365 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 TUBGCP4Q9UGJ1 667 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 USP6P35125 1406 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 PSMG1O95456 288 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 RBP3P10745 1247 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 CDH3P22223 829 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 DNAJB2P25686 324 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 ZNF844Q08AG5 666 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 PTPN20Q4JDL3 420 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 ZNF512BQ96KM6 892 aaPredicted RBP8.09□□□□□ -1.11
CIITA-201ENST00000324288 CFAP74Q9C0B2 1584 aa8.09□□□□□ -1.11
CIITA-201ENST00000324288 SSU72P8A0A1W2PR75 194 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms