RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 MARK2Q7KZI7 788 aaKnown RBP19.73■□□□□ 0.75
RTN4-201ENST00000317610 CHST13Q8NET6 341 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 DEPDC1BQ8WUY9 529 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 DDX50Q9BQ39 737 aaKnown RBP19.73■□□□□ 0.75
RTN4-201ENST00000317610 GCOM2Q9BZD3 368 aaPredicted RBP19.73■□□□□ 0.75
RTN4-201ENST00000317610 STK32BQ9NY57 414 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 DNAJC16Q9Y2G8 782 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 MAD1L1Q9Y6D9 718 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 MDM4O15151 490 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 B4GALT5O43286 388 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 ITM2AO43736 263 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 AP1G2O75843 785 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 ALDH1A2O94788 518 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 TOP3BO95985 862 aaKnown RBP19.73■□□□□ 0.75
RTN4-201ENST00000317610 ITGB3P05106 788 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 ZCCHC18P0CG32 403 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 LCLAT1Q6UWP7 414 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 EXOC8Q8IYI6 725 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 LRRC71Q8N4P6 559 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 SLC25A41Q8N5S1 370 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 OR6Y1Q8NGX8 325 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 HEXIM2Q96MH2 286 aaKnown RBP19.73■□□□□ 0.75
RTN4-201ENST00000317610 SNRNP25Q9BV90 132 aaKnown RBP19.73■□□□□ 0.75
RTN4-201ENST00000317610 APOL6Q9BWW8 343 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 TNFSF13BQ9Y275 285 aa19.73■□□□□ 0.75
RTN4-201ENST00000317610 RNASEH1O60930 286 aaKnown RBP19.72■□□□□ 0.75
RTN4-201ENST00000317610 EDNRBP24530 442 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 XIAPP98170 497 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 SLC25A3Q00325 362 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 INCA1Q0VD86 236 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 CA9Q16790 459 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 DCAF15Q66K64 600 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 MAP1SQ66K74 1059 aaPredicted RBP19.72■□□□□ 0.75
RTN4-201ENST00000317610 RNF111Q6ZNA4 994 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 TMEM130Q8N3G9 435 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 SHKBP1Q8TBC3 707 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 EBF3Q9H4W6 596 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 PICK1Q9NRD5 415 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 DNAJC28Q9NX36 388 aa19.72■□□□□ 0.75
RTN4-201ENST00000317610 GLRA3O75311 464 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 TOMM70O94826 608 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 PFKMP08237 780 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 MYL4P12829 197 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 ALOX15P16050 662 aaPredicted RBP19.71■□□□□ 0.75
RTN4-201ENST00000317610 SLC1A6P48664 564 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 ERFP50548 548 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 BIRC2Q13490 618 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 SEMA5AQ13591 1074 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 METTL7BQ6UX53 244 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 PPP1R14CQ8TAE6 165 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 JADE3Q92613 823 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 FAM96AQ9H5X1 160 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 NRDE2Q9H7Z3 1164 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 APOBEC2Q9Y235 224 aaKnown RBP19.71■□□□□ 0.75
RTN4-201ENST00000317610 PLIN3O60664 434 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 LYPLA1O75608 230 aaPredicted RBP19.71■□□□□ 0.75
RTN4-201ENST00000317610 COPAP53621 1224 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 NIPAL4Q0D2K0 466 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 CCNIQ14094 377 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 MAVSQ7Z434 540 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 ACTRT2Q8TDY3 377 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 SPATA16Q9BXB7 569 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 HOXC10Q9NYD6 342 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 KIAA1257Q9ULG3 409 aa19.71■□□□□ 0.75
RTN4-201ENST00000317610 BARX2Q9UMQ3 279 aaPredicted RBP19.71■□□□□ 0.75
RTN4-201ENST00000317610 GOLGB1Q14789 3259 aaKnown RBP19.71■□□□□ 0.75
RTN4-201ENST00000317610 LACTBL1A8MY62 500 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 SIN3BO75182 1162 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 GRAP2O75791 330 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 MAP3K6O95382 1288 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 SERPINE1P05121 402 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 P4HA1P13674 534 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 RPL10AP62906 217 aaKnown RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 CNPY1Q3B7I2 92 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 LIN52Q52LA3 116 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 N4BP2L1Q5TBK1 243 aaPredicted RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 JADE1Q6IE81 842 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 DPY19L2Q6NUT2 758 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 SCYL2Q6P3W7 929 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 OLFML1Q6UWY5 402 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 CDR2LQ86X02 465 aaPredicted RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 FAM124BQ9H5Z6 455 aaPredicted RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 DMAP1Q9NPF5 467 aaPredicted RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 SLC4A7Q9Y6M7 1214 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 A0A0G2JMZ2 1700 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 LRRC37A2A6NM11 1700 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 PIK3R2O00459 728 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 ALDOAP04075 364 aaKnown RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 GSTT1P30711 240 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 RPL26P61254 145 aaKnown RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 MBTD1Q05BQ5 628 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 DYNC1I2Q13409 638 aaKnown RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 PCLAFQ15004 111 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.7■□□□□ 0.742e-32■□□□□ 11.2
RTN4-201ENST00000317610 LRRN4Q8WUT4 740 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 KHSRPQ92945 711 aaKnown RBP eCLIP19.7■□□□□ 0.743e-8■■□□□ 11.5
RTN4-201ENST00000317610 MMP19Q99542 508 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 VCX3BQ9H321 246 aa19.7■□□□□ 0.74
RTN4-201ENST00000317610 NGRNQ9NPE2 291 aaKnown RBP19.7■□□□□ 0.74
RTN4-201ENST00000317610 TSPAN16Q9UKR8 245 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms