RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 CHN1P15882 459 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 RBL1P28749 1068 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 TLE2Q04725 743 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 FAAP100Q0VG06 881 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 MORF4L2Q15014 288 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 FAM171A1Q5VUB5 890 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 SDHAF4Q5VUM1 108 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 BSPRYQ5W0U4 402 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 SCN4BQ8IWT1 228 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 SERPINB12Q96P63 405 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 PGLYRP2Q96PD5 576 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 FOXP3Q9BZS1 431 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 ADAM28Q9UKQ2 775 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 KCNN4O15554 427 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 OAZ2O95190 189 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 COL6A1P12109 1028 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 MNX1P50219 401 aaPredicted RBP23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 TRIM60Q495X7 471 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 VARS2Q5ST30 1063 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 CPT1BQ92523 772 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 USP29Q9HBJ7 922 aa23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 WDR6Q9NNW5 1121 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-202ENST00000308354 TCRBV7S3A2A0A539 114 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 GMNCA6NCL1 334 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 ARL4AP40617 200 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 PGFP49763 221 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 FASTKD3Q14CZ7 662 aaKnown RBP23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 PM20D1Q6GTS8 502 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 C4orf50Q6ZRC1 276 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 VSIG1Q86XK7 387 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 DIS3LQ8TF46 1054 aaKnown RBP23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 PRCCQ92733 491 aaPredicted RBP23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 NR2E3Q9Y5X4 410 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 USP3Q9Y6I4 520 aa23.27■■□□□ 1.32
PDLIM2-202ENST00000308354 FAM72CH0Y354 149 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 BANF1O75531 89 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 UPP2O95045 317 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 SLC11A1P49279 550 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 SLC5A3P53794 718 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 BASP1P80723 227 aaKnown RBP23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 FAM72AQ5TYM5 149 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 NCBP2-AS2Q69YL0 99 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 FAM72DQ6L9T8 149 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 EXOC3L1Q86VI1 746 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 FAM72BQ86X60 149 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 ZCWPW1Q9H0M4 648 aa23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 FARP1Q9Y4F1 1045 aaPredicted RBP23.27■■□□□ 1.31
PDLIM2-202ENST00000308354 TBKBP1A7MCY6 615 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 ANKRD65E5RJM6 399 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 ALDH2P05091 517 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 STIP1P31948 543 aaKnown RBP23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 GPR15P49685 360 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 ARPP19P56211 112 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 TMEM173Q86WV6 379 aaPredicted RBP23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 RNF139Q8WU17 664 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 MARCH5Q9NX47 278 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 SHOC2Q9UQ13 582 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 NLRC5Q86WI3 1866 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 TTC3P53804 2025 aa23.26■■□□□ 1.31
PDLIM2-202ENST00000308354 FOXO6A8MYZ6 492 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 ADRA1BP35368 520 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 CEP128Q6ZU80 1094 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 CRIPAKQ8N1N5 446 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 APBB2Q92870 758 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 XPO6Q96QU8 1125 aaKnown RBP23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 ARHGEF4Q9NR80 690 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 ZNF487B1APH4 448 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 DDR2Q16832 855 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 CTXN3Q4LDR2 81 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 EFHC2Q5JST6 749 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 TAOK1Q7L7X3 1001 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 ANKRD33Q7Z3H0 272 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 ARHGEF2Q92974 986 aaKnown RBP23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 DTLQ9NZJ0 730 aa23.25■■□□□ 1.31
PDLIM2-202ENST00000308354 TCEA3O75764 348 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 NPAS4Q8IUM7 802 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 PPIL6Q8IXY8 311 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 TTC9BQ8N6N2 239 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 ATXN2LQ8WWM7 1075 aaKnown RBP23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 CENPTQ96BT3 561 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 COLEC11Q9BWP8 271 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 NUDT5Q9UKK9 219 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 SNX10Q9Y5X0 201 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 TNFRSF10BO14763 440 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 TMEM63AO94886 807 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 CREB1P16220 341 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 FAXCQ5TGI0 409 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 KCNT2Q6UVM3 1135 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 CAPN12Q6ZSI9 719 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 TAC4Q86UU9 113 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 NAT8LQ8N9F0 302 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 ATAD1Q8NBU5 361 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 GPR152Q8TDT2 470 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 IRGQQ8WZA9 623 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 TBK1Q9UHD2 729 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 FBXW11Q9UKB1 542 aa23.24■■□□□ 1.31
PDLIM2-202ENST00000308354 PTPRDP23468 1912 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms