RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ZBED2Q9BTP6 218 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 CINPQ9BW66 212 aaPredicted RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 SYTL2Q9HCH5 934 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 ATXN2Q99700 1313 aaKnown RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 DDHD2O94830 711 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 TALDO1P37837 337 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 CDK7P50613 346 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 PGS1Q32NB8 556 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 TTC27Q6P3X3 843 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 KYAT3Q6YP21 454 aaKnown RBP17.79■□□□□ 0.44
SYNPO-201ENST00000307662 FGD2Q7Z6J4 655 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 EMC1Q8N766 993 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 STKLD1Q8NE28 680 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 A0A0U1RQJ8 604 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 MYBL2P10244 700 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 PGAM1P18669 254 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 SLC16A1P53985 500 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 CNTN1Q12860 1018 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 CYP2R1Q6VVX0 501 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 HOMEZQ8IX15 550 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 ZSCAN18Q8TBC5 510 aaPredicted RBP17.79■□□□□ 0.44
SYNPO-201ENST00000307662 FAM210AQ96ND0 272 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 APOL2Q9BQE5 337 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 SEMA6AQ9H2E6 1030 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 RAD21L1Q9H4I0 556 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 POLG2Q9UHN1 485 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 LSM7Q9UK45 103 aaKnown RBP17.79■□□□□ 0.44
SYNPO-201ENST00000307662 SMIM31A0A1B0GVY4 71 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 GAS2O43903 313 aaKnown RBP17.79■□□□□ 0.44
SYNPO-201ENST00000307662 HBP1O60381 514 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 ETNPPLQ8TBG4 499 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 RXFP2Q8WXD0 754 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 DMAP1Q9NPF5 467 aaPredicted RBP17.79■□□□□ 0.44
SYNPO-201ENST00000307662 H0YC42 278 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 CYP2F1P24903 491 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 NAMPTP43490 491 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 MRPS22P82650 360 aaKnown RBP17.79■□□□□ 0.44
SYNPO-201ENST00000307662 PDK3Q15120 406 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 CPNE1Q99829 537 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 NMRK1Q9NWW6 199 aa17.79■□□□□ 0.44
SYNPO-201ENST00000307662 ALOX12P18054 663 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 TRAF3Q13114 568 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ITGADQ13349 1161 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 TRIQKQ629K1 86 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ZCCHC23Q6ZST2 131 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 RBM46Q8TBY0 533 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 FIG4Q92562 907 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 TAAR1Q96RJ0 339 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 APOL4Q9BPW4 351 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 FICDQ9BVA6 458 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 CISHQ9NSE2 258 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 PNMA8BQ9ULN7 279 aaPredicted RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 TBKBP1A7MCY6 615 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 LIN7AO14910 233 aaPredicted RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 GH1P01241 217 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 IFNA14P01570 189 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 PDZK1Q5T2W1 519 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ZNF618Q5T7W0 954 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 SV2AQ7L0J3 742 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ARHGEF19Q8IW93 802 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 DCP1BQ8IZD4 617 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 HS6ST3Q8IZP7 471 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 BHLHE22Q8NFJ8 381 aaPredicted RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ZNF398Q8TD17 642 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 VCPIP1Q96JH7 1222 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 CLCA2Q9UQC9 943 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ANKRD6Q9Y2G4 727 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 WDR27A2RRH5 827 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ATG7O95352 703 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 NPTXRO95502 500 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 MT-CO1P00395 513 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 EIF2S1P05198 315 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 FGFR2P21802 821 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ST13P50502 369 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 RGS21Q2M5E4 152 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 EXOC3L1Q86VI1 746 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 DNPEPQ9ULA0 475 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 RPL26L1Q9UNX3 145 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 SIK3Q9Y2K2 1263 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 PARNO95453 639 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 F9P00740 461 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 CCDC130P13994 396 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 CHI3L1P36222 383 aaPredicted RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 SERPINH1P50454 418 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ALDH6A1Q02252 535 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 INTS5Q6P9B9 1019 aaKnown RBP17.78■□□□□ 0.44
SYNPO-201ENST00000307662 ZSWIM2Q8NEG5 633 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 SPATA16Q9BXB7 569 aa17.78■□□□□ 0.44
SYNPO-201ENST00000307662 TRDMT1O14717 391 aaKnown RBP17.77■□□□□ 0.44
SYNPO-201ENST00000307662 ENTPD5O75356 428 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 KRT36O76013 467 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 SKIV2L2P42285 1042 aaKnown RBP17.77■□□□□ 0.44
SYNPO-201ENST00000307662 RPL5P46777 297 aaKnown RBP17.77■□□□□ 0.44
SYNPO-201ENST00000307662 ZNF662Q6ZS27 426 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 ACOT1Q86TX2 421 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 CYP4Z1Q86W10 505 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 FNIP1Q8TF40 1166 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 TRIM8Q9BZR9 551 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 FANCEQ9HB96 536 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 CHST7Q9NS84 486 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms