RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 KANSL1LA0AUZ9 987 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 J3QRK9 145 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 CHRNA5P30532 468 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 YWHAZP63104 245 aaKnown RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 CRADDP78560 199 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 MYBPC2Q14324 1141 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 PPM1JQ5JR12 505 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 RARS2Q5T160 578 aaKnown RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 DNAJC24Q6P3W2 148 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 PCGF5Q86SE9 256 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 JOSD2Q8TAC2 188 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 SPATA18Q8TC71 538 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 MAPK15Q8TD08 544 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 AKT1S1Q96B36 256 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 FBXL8Q96CD0 374 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 Q9H521 79 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 RIMS3Q9UJD0 308 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 NR2E3Q9Y5X4 410 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 FGF3P11487 239 aaPredicted RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 ACO1P21399 889 aaKnown RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 L1CAMP32004 1257 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 RFC1P35251 1148 aaPredicted RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 ETFBP38117 255 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 GRIA1P42261 906 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 GCNT1Q02742 428 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 ADGRE1Q14246 886 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 N4BP2L1Q5TBK1 243 aaPredicted RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 TDRD10Q5VZ19 366 aaKnown RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 PACS1Q6VY07 963 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 CLVS1Q8IUQ0 354 aaPredicted RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 ERI1Q8IV48 349 aaKnown RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 C10orf107Q8IVU9 208 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 HACE1Q8IYU2 909 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 IL31RAQ8NI17 732 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 CCDC97Q96F63 343 aaPredicted RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 KLHL32Q96NJ5 620 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 TRNAU1APQ9NX07 287 aaKnown RBP13.91□□□□□ -0.18
SKA3-201ENST00000298260 SLC9A2Q9UBY0 812 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 EMCNQ9ULC0 261 aa13.91□□□□□ -0.18
SKA3-201ENST00000298260 HTR3EA5X5Y0 456 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 HNRNPDLO14979 420 aaKnown RBP13.9□□□□□ -0.18
SKA3-201ENST00000298260 RNASEH2AO75792 299 aaKnown RBP13.9□□□□□ -0.18
SKA3-201ENST00000298260 GSTT2P0CG29 244 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 GSTT2BP0CG30 244 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ITGB5P18084 799 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 CD247P20963 164 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 NPTX2P47972 431 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 PRAMEP78395 509 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 SLC9B1Q4ZJI4 515 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ZBTB41Q5SVQ8 909 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ANGEL2Q5VTE6 544 aaKnown RBP13.9□□□□□ -0.18
SKA3-201ENST00000298260 MBLAC2Q68D91 279 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 PPP1R2P3Q6NXS1 205 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 CDC42EP5Q6NZY7 148 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 DARS2Q6PI48 645 aaKnown RBP13.9□□□□□ -0.18
SKA3-201ENST00000298260 SORT1Q99523 831 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 TEKT3Q9BXF9 490 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 BRD8Q9H0E9 1235 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 WDR55Q9H6Y2 383 aaPredicted RBP13.9□□□□□ -0.18
SKA3-201ENST00000298260 SLC38A7Q9NVC3 462 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 EPS15L1Q9UBC2 864 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ITGA11Q9UKX5 1188 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 PRR12Q9ULL5 1215 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 SCINQ9Y6U3 715 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 K7EPI3 171 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ZC3H11AO75152 810 aaKnown RBP eCLIP13.9□□□□□ -0.18
SKA3-201ENST00000298260 APRTP07741 180 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 DPP6P42658 865 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 GJA8P48165 433 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 TNS4Q8IZW8 715 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 NLRP7Q8WX94 980 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ZNF606Q8WXB4 792 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ATP2A3Q93084 1043 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 OR52B2Q96RD2 323 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 MXRA8Q9BRK3 442 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 PPP1R1BQ9UD71 204 aaPredicted RBP13.9□□□□□ -0.18
SKA3-201ENST00000298260 RAB26Q9ULW5 256 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 COQ6Q9Y2Z9 468 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 STK24Q9Y6E0 443 aa13.9□□□□□ -0.18
SKA3-201ENST00000298260 ASTN2O75129 1339 aaPredicted RBP13.89□□□□□ -0.19
SKA3-201ENST00000298260 FUOMA2VDF0 154 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 TPD52L2O43399 206 aaKnown RBP13.89□□□□□ -0.19
SKA3-201ENST00000298260 KLHL2O95198 593 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 VNN1O95497 513 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 ENO3P13929 434 aaPredicted RBP13.89□□□□□ -0.19
SKA3-201ENST00000298260 PSMC3P17980 439 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 GRAPQ13588 217 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 TBCCQ15814 346 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 WDR44Q5JSH3 913 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 OLFML1Q6UWY5 402 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 SNX32Q86XE0 403 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 C12orf56Q8IXR9 622 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 SLC7A5P1Q8MH63 180 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 LRRC43Q8N309 656 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 TMEM161BQ8NDZ6 487 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 GRAPLQ8TC17 118 aaPredicted RBP13.89□□□□□ -0.19
SKA3-201ENST00000298260 RANBP9Q96S59 729 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 SPATA7Q9P0W8 599 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 NUB1Q9Y5A7 615 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 RGL2O15211 777 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms