RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RABGEF1Q9UJ41 708 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 GABRDO14764 452 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 MOCS2O96007 188 aaPredicted RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 HOXC8P31273 242 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 NOS2P35228 1153 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 DNAJC3Q13217 504 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 DPYSL2Q16555 572 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 FAM133BQ5BKY9 247 aaKnown RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 NCBP2-AS2Q69YL0 99 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 OVOS1Q6IE37 1185 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 PRPF39Q86UA1 669 aaKnown RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 LRRTM3Q86VH5 581 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 MPP5Q8N3R9 675 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 ZMIZ2Q8NF64 920 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 TFB1MQ8WVM0 346 aaKnown RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 TEKT4Q8WW24 435 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 CELF6Q96J87 481 aaKnown RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 ANLNQ9NQW6 1124 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 ARHGEF4Q9NR80 690 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 ABI2Q9NYB9 513 aaPredicted RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 FZD10Q9ULW2 581 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 GIT1Q9Y2X7 761 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 CAPN7Q9Y6W3 813 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 CCDC78A2IDD5 438 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 USP12O75317 370 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 CPP00450 1065 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 INHBAP08476 426 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 ODC1P11926 461 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 ACLYP53396 1101 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 SLC9A4Q6AI14 798 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 CES3Q6UWW8 571 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 CCDC197Q8NCU1 140 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 ZNF317Q96PQ6 595 aaPredicted RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 FRMD8P1Q9BZ68 369 aaPredicted RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 FOXP3Q9BZS1 431 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 CHST12Q9NRB3 414 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 UBP1Q9NZI7 540 aa11.88□□□□□ -0.51
CUX1-202ENST00000292538 PSMC3IPQ9P2W1 217 aaPredicted RBP11.88□□□□□ -0.51
CUX1-202ENST00000292538 A0A0U1RQF3 1178 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 TCRBV9S1A1TA0A576 114 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 FAM47DPA6NHR8 397 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 F7P08709 466 aaPredicted RBP11.87□□□□□ -0.51
CUX1-202ENST00000292538 PCSK1P29120 753 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 PBX3P40426 434 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 CORO7P57737 925 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 PPP2R5DQ14738 602 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 SLC45A4Q5BKX6 768 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 HHATQ5VTY9 493 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 PID1Q7Z2X4 250 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 CDKL3Q8IVW4 592 aaPredicted RBP11.87□□□□□ -0.51
CUX1-202ENST00000292538 PDCD7Q8N8D1 485 aaKnown RBP11.87□□□□□ -0.51
CUX1-202ENST00000292538 ANKS4BQ8N8V4 417 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 OR10T2Q8NGX3 314 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 MAML1Q92585 1016 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 WDCPQ9H6R7 721 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 LTFP02788 710 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 TPI1P60174 286 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 BMPR2Q13873 1038 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 TRABD2AQ86V40 505 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 UNC5BQ8IZJ1 945 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 AGGF1Q8N302 714 aaeCLIP11.87□□□□□ -0.512e-7■■■■■ 57.8
CUX1-202ENST00000292538 PCSK9Q8NBP7 692 aaKnown RBP11.87□□□□□ -0.51
CUX1-202ENST00000292538 HTR3CQ8WXA8 447 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 CAPNS2Q96L46 248 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 SLC13A1Q9BZW2 595 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 TKTL2Q9H0I9 626 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 PRDM12Q9H4Q4 367 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 SFMBT1Q9UHJ3 866 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 MSI1O43347 362 aaKnown RBP11.87□□□□□ -0.51
CUX1-202ENST00000292538 UGT1A9O60656 530 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 FYNP06241 537 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 VAV1P15498 845 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 EPHB2P29323 1055 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 DAOAP59103 153 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 MGAT3Q09327 533 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 FAAP100Q0VG06 881 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 PTK7Q13308 1070 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 SPRED3Q2MJR0 410 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 SLC39A12Q504Y0 691 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 TNFAIP8L3Q5GJ75 292 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 STRADAQ7RTN6 431 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 COLGALT1Q8NBJ5 622 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 USP33Q8TEY7 942 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 CENPIQ92674 756 aaPredicted RBP11.87□□□□□ -0.51
CUX1-202ENST00000292538 SMARCD1Q96GM5 515 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 APOL2Q9BQE5 337 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 FAM124BQ9H5Z6 455 aaPredicted RBP11.87□□□□□ -0.51
CUX1-202ENST00000292538 UGT1A7Q9HAW7 530 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 UGT1A10Q9HAW8 530 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 UGT1A8Q9HAW9 530 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 SLCO1B3Q9NPD5 702 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 SLC17A6Q9P2U8 582 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 CDH9Q9ULB4 789 aa11.87□□□□□ -0.51
CUX1-202ENST00000292538 E2F8A0AVK6 867 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 NT5C1B-RDH14C9J2C7 533 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 H3BRJ5 948 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 RNF103O00237 685 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 MT-ND3P03897 115 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 KCNJ11Q14654 390 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 ANKRD20A2Q5SQ80 823 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms