RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CNKSR3Q6P9H4 555 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 CASP10Q92851 521 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 LRRC45Q96CN5 670 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 LGMNQ99538 433 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 EPB41L4BQ9H329 900 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 ACBD3Q9H3P7 528 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 WDCPQ9H6R7 721 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 CWH43Q9H720 699 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 PCDHB5Q9Y5E4 795 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 TLDC2A0PJX2 215 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 ARHGEF37A1IGU5 675 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 SYN3O14994 580 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 ITGAVP06756 1048 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 KYNUQ16719 465 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 PM20D1Q6GTS8 502 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 RNF139Q8WU17 664 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 ARMC5Q96C12 935 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 USP3Q9Y6I4 520 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 PRRC2BQ5JSZ5 2229 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 PIAS1O75925 651 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 ITIH2P19823 946 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 CA8P35219 290 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 ARL4AP40617 200 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 ROR1Q01973 937 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 NOMO1Q15155 1222 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 TTMPQ5BVD1 217 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 ARCQ7LC44 396 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 GOLGA6L1Q8N7Z2 621 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 ARHGEF4Q9NR80 690 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 WHRNQ9P202 907 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 EFR3BQ9Y2G0 817 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 HSPA1AP0DMV8 641 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 HSPA1BP0DMV9 641 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 BASP1P80723 227 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 MRPL58Q14197 206 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 FASTKD3Q14CZ7 662 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 NECAB2Q7Z6G3 386 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.1■□□□□ 0.33
USP4-201ENST00000265560 CCDC110Q8TBZ0 833 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 MRPL9Q9BYD2 267 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 GMIPQ9P107 970 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 EYSQ5T1H1 3165 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 MTMR11A4FU01 709 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 HOXA2O43364 376 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 PPFIA2O75334 1257 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 CTCFP49711 727 aaPredicted RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 BTG3Q14201 252 aaPredicted RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 EFHC2Q5JST6 749 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 KCNT2Q6UVM3 1135 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 MREGQ8N565 214 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 TTC13Q8NBP0 860 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 TOP1MTQ969P6 601 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 ZNF670Q9BS34 389 aa17.1■□□□□ 0.33
USP4-201ENST00000265560 DRG1Q9Y295 367 aaKnown RBP17.1■□□□□ 0.33
USP4-201ENST00000265560 WDR27A2RRH5 827 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 TIMP1P01033 207 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 HMBSP08397 361 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 SPATA31D3P0C874 917 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 NFE2Q16621 373 aaPredicted RBP17.09■□□□□ 0.33
USP4-201ENST00000265560 NCBP2-AS2Q69YL0 99 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 SPATA31D4Q6ZUB0 917 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 MIB1Q86YT6 1006 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 FBXO22Q8NEZ5 403 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 DEPDC1BQ8WUY9 529 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 TMEM106CQ9BVX2 250 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 TXLNGYQ9BZA5 131 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 CDC42EP4Q9H3Q1 356 aaKnown RBP17.09■□□□□ 0.33
USP4-201ENST00000265560 REV3LO60673 3130 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 MYO16Q9Y6X6 1858 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 H0YGN5 161 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 MFSD11O43934 449 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 ZNF844Q08AG5 666 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 IFFO1Q0D2I5 559 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 SLC9A4Q6AI14 798 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 TTC19Q6DKK2 380 aaPredicted RBP17.09■□□□□ 0.33
USP4-201ENST00000265560 DRICH1Q6PGQ1 229 aaPredicted RBP17.09■□□□□ 0.33
USP4-201ENST00000265560 RHBDF2Q6PJF5 856 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 NUP93Q8N1F7 819 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 IGSF21Q96ID5 467 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 DTLQ9NZJ0 730 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 FBXW11Q9UKB1 542 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 NFS1Q9Y697 457 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 SHROOM3Q8TF72 1996 aa17.09■□□□□ 0.33
USP4-201ENST00000265560 FOXO6A8MYZ6 492 aa17.08■□□□□ 0.33
USP4-201ENST00000265560 EEF2KO00418 725 aaKnown RBP17.08■□□□□ 0.33
USP4-201ENST00000265560 WDR5P61964 334 aaKnown RBP17.08■□□□□ 0.33
USP4-201ENST00000265560 LMNB2Q03252 620 aa17.08■□□□□ 0.33
USP4-201ENST00000265560 EIF1ADQ8N9N8 165 aaKnown RBP17.08■□□□□ 0.33
USP4-201ENST00000265560 CCNYQ8ND76 341 aa17.08■□□□□ 0.33
USP4-201ENST00000265560 USP29Q9HBJ7 922 aa17.08■□□□□ 0.33
USP4-201ENST00000265560 OR12D3Q9UGF7 316 aa17.08■□□□□ 0.33
USP4-201ENST00000265560 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.08■□□□□ 0.33
USP4-201ENST00000265560 ALS2CLQ60I27 953 aa17.08■□□□□ 0.32
USP4-201ENST00000265560 BNIPLQ7Z465 357 aa17.08■□□□□ 0.32
USP4-201ENST00000265560 ANKMY2Q8IV38 441 aa17.08■□□□□ 0.32
USP4-201ENST00000265560 MRRFQ96E11 262 aaKnown RBP17.08■□□□□ 0.32
USP4-201ENST00000265560 SEPT10Q9P0V9 454 aa17.08■□□□□ 0.32
USP4-201ENST00000265560 SYN1P17600 705 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 TAF10Q12962 218 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 RWDD4Q6NW29 188 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms