RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ATG7O95352 703 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 AP2B1P63010 937 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 SLC18A2Q05940 514 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 DNERQ8NFT8 737 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 SHKBP1Q8TBC3 707 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 SH3TC2Q8TF17 1288 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 FNIP1Q8TF40 1166 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 NDRG1Q92597 394 aaKnown RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 OTUD5Q96G74 571 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 LGMNQ99538 433 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 DHRS4Q9BTZ2 278 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 USP29Q9HBJ7 922 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 MAN1C1Q9NR34 630 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 PDGFCQ9NRA1 345 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 MFHAS1Q9Y4C4 1052 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 SLC15A5A6NIM6 579 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 C2CD4BA6NLJ0 364 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 ITM2AO43736 263 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 IQCF3P0C7M6 154 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CDH5P33151 784 aaPredicted RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 MRPS5P82675 430 aaKnown RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 HIC1Q14526 733 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CCDC14Q49A88 953 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 PPM1JQ5JR12 505 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CHSY1Q86X52 802 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 ULK2Q8IYT8 1036 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CLEC4CQ8WTT0 213 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 RNPEPQ9H4A4 650 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 DPP3Q9NY33 737 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 SMAPO00193 183 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 AHCYL1O43865 530 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 B4GALT4O60513 344 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 NPTXRO95502 500 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 MLH1P40692 756 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 GRAMD1BQ3KR37 738 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 RALGPS1Q5JS13 557 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 TCHHL1Q5QJ38 904 aaPredicted RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 RASSF3Q86WH2 238 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 PYROXD2Q8N2H3 581 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CHST13Q8NET6 341 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 GSDMBQ8TAX9 411 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CDKL2Q92772 493 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 PGBD4Q96DM1 585 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 MCRS1Q96EZ8 462 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 ZBED3Q96IU2 234 aaPredicted RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 ZNF184Q99676 751 aaPredicted RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 FAM49AQ9H0Q0 323 aaPredicted RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 POPDC2Q9HBU9 364 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 PNPOQ9NVS9 261 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 ZNF358Q9NW07 568 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 KCNK4Q9NYG8 393 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 A8MXQ7 604 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 RFPL1O75677 317 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 PROCP04070 461 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 ADORA2AP29274 412 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CCNG1P51959 295 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 ASPHQ12797 758 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 CUL3Q13618 768 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 EML3Q32P44 896 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 EZH1Q92800 747 aaPredicted RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 SLC7A8Q9UHI5 535 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 BARX2Q9UMQ3 279 aaPredicted RBP13.06□□□□□ -0.32
LIG1-201ENST00000263274 HES2Q9Y543 173 aa13.06□□□□□ -0.32
LIG1-201ENST00000263274 A6NHS1 94 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 NEMP1O14524 444 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 CFLARO15519 480 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 FAM189A1O60320 539 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 INSRRP14616 1297 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 ANPEPP15144 967 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 MGAT1P26572 445 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 OLIG2Q13516 323 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 CWF19L1Q69YN2 538 aaKnown RBP13.05□□□□□ -0.32
LIG1-201ENST00000263274 TNS4Q8IZW8 715 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 DNAAF3Q8N9W5 541 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 SPATC1LQ9H0A9 340 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 STX18Q9P2W9 335 aaKnown RBP13.05□□□□□ -0.32
LIG1-201ENST00000263274 MRPL42Q9Y6G3 142 aaKnown RBP13.05□□□□□ -0.32
LIG1-201ENST00000263274 A0A1B0GVG6 124 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 CCDC160A6NGH7 325 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 TPP1O14773 563 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 SORBS2O94875 1100 aaKnown RBP13.05□□□□□ -0.32
LIG1-201ENST00000263274 RTN3O95197 1032 aaPredicted RBP13.05□□□□□ -0.32
LIG1-201ENST00000263274 IL18RAPO95256 599 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 ERVK-10P10266 1014 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 ITGA9Q13797 1035 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 KCTD2Q14681 263 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 RABGAP1LQ5R372 815 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 MFSD4BQ5TF39 518 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 IRGCQ6NXR0 463 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 CDKL3Q8IVW4 592 aaPredicted RBP13.05□□□□□ -0.32
LIG1-201ENST00000263274 KBTBD2Q8IY47 623 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 PQLC3Q8N755 202 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 TRPM4Q8TD43 1214 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 FGD4Q96M96 766 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 SYT17Q9BSW7 474 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 NRDE2Q9H7Z3 1164 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 FETUBQ9UGM5 382 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 PPM1HQ9ULR3 514 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 COL4A5P29400 1685 aa13.05□□□□□ -0.32
LIG1-201ENST00000263274 GOLGA8QA0A0J9YX86 632 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms