RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 FLCNQ8NFG4 579 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 CORO1BQ9BR76 489 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 PRKD2Q9BZL6 878 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 FNIP2Q9P278 1114 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 IP6K2Q9UHH9 426 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 MRPS23Q9Y3D9 190 aaKnown RBP9.01□□□□□ -0.97
VPS4B-201ENST00000238497 EP300Q09472 2414 aaPredicted RBP9.01□□□□□ -0.97
VPS4B-201ENST00000238497 FAM187AA6NFU0 413 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 H7C0C1 242 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 CREB1P16220 341 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 FGFR3P22607 806 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 ATP5OP48047 213 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 CDH6P55285 790 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 CCDC142Q17RM4 750 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 OVOS1Q6IE37 1185 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 C15orf39Q6ZRI6 1047 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 HFE2Q6ZVN8 426 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 SRRM1Q8IYB3 904 aaKnown RBP9.01□□□□□ -0.97
VPS4B-201ENST00000238497 ATL2Q8NHH9 583 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 IPO4Q8TEX9 1081 aaKnown RBP9.01□□□□□ -0.97
VPS4B-201ENST00000238497 SENP8Q96LD8 212 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 SDCBP2Q9H190 292 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 CDC42EP4Q9H3Q1 356 aaKnown RBP9.01□□□□□ -0.97
VPS4B-201ENST00000238497 TMBIM4Q9HC24 238 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 HCFC1R1Q9NWW0 138 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 MTRRQ9UBK8 725 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 MEFVO15553 781 aaPredicted RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 CALB1P05937 261 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 KRT15P19012 456 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 FSHRP23945 695 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 MDH1P40925 334 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 KRT81Q14533 505 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 TMED2Q15363 201 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 PPP2R5EQ16537 467 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 BBS9Q3SYG4 887 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 NPNTQ6UXI9 565 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 METTL23Q86XA0 190 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 RNF168Q8IYW5 571 aaPredicted RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 ARFGAP2Q8N6H7 521 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 FAM81BQ96LP2 452 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 CITO14578 2027 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 WDFY4Q6ZS81 3184 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 SDK1Q7Z5N4 2213 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 TMEM221A6NGB7 291 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 HMGB1P1B2RPK0 211 aaPredicted RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 E5RJQ4 531 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 M0R296 226 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 CES2O00748 559 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 SYN3O14994 580 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 EIF3HO15372 352 aaKnown RBP eCLIP9□□□□□ -0.97
VPS4B-201ENST00000238497 SPAG7O75391 227 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 P4HA1P13674 534 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 PTGIRP43119 386 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 BYSLQ13895 437 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 HADHQ16836 314 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 PABPC1LQ4VXU2 614 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 ZDHHC24Q6UX98 284 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 TRIM67Q6ZTA4 783 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 HOOK3Q86VS8 718 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 ELMOD1Q8N336 334 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 OTUD6BQ8N6M0 293 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 EDAQ92838 391 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 MCRS1Q96EZ8 462 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 TMEM176AQ96HP8 235 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 PIWIL1Q96J94 861 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 SUSD3Q96L08 255 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 CFAP57Q96MR6 1250 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 DCLK3Q9C098 648 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 ELOVL4Q9GZR5 314 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 PABPC3Q9H361 631 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 WDR6Q9NNW5 1121 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 INTS9Q9NV88 658 aaKnown RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 HESX1Q9UBX0 185 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 SIX4Q9UIU6 781 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 FBXW11Q9UKB1 542 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 SLC27A5Q9Y2P5 690 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 CLUHO75153 1309 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 GOLGA6L7A0A1B0GV03 622 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 WDR91A4D1P6 747 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 TMEM189-UBE2V1I3L0A0 370 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 GOLGA8RI6L899 631 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 MYO1CO00159 1063 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 MICAL2O94851 1124 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 PIGRP01833 764 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 CYP1A1P04798 512 aaPredicted RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 MYL4P12829 197 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 MMP8P22894 467 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 PPP2R2AP63151 447 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 ZXDAP98168 799 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 RAB33AQ14088 237 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 SURF1Q15526 300 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 XKR4Q5GH76 650 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF677Q86XU0 584 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 ZBED8Q8IZ13 594 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 WDTC1Q8N5D0 677 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 FAM71DQ8N9W8 422 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 MYADMQ96S97 322 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 RBM15Q96T37 977 aaKnown RBP eCLIP9□□□□□ -0.97
VPS4B-201ENST00000238497 KLF6Q99612 283 aaPredicted RBP9□□□□□ -0.97
VPS4B-201ENST00000238497 ZDHHC7Q9NXF8 308 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms