RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RTFDC1Q9BY42 306 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NOL11Q9H8H0 719 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 KLHL1Q9NR64 748 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NRBP2Q9NSY0 501 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 GRHPRQ9UBQ7 328 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PSME2Q9UL46 239 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PTCH2Q9Y6C5 1203 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TAF1P21675 1872 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RNF113AO15541 343 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 STAG3L3P0CL85 134 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MAPKAPK2P49137 400 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DRG2P55039 364 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SREBF2Q12772 1141 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PTPAQ15257 358 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GPAT3Q53EU6 434 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RSBN1LQ6PCB5 846 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DDX53Q86TM3 631 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NUDCD1Q96RS6 583 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NCOR1P1Q9H4R4 102 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 METTL8Q9H825 291 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MRM3Q9HC36 420 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF224Q9NZL3 707 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MYOFQ9NZM1 2061 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM114B3SHH9 223 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 E9PBE3 544 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 H7C1D1 291 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GSTA4O15217 222 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 VPS4BO75351 444 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RECQL5O94762 991 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ASGR1P07306 291 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 AXLP30530 894 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GSSP48637 474 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PRRX1P54821 245 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NPEPPSP55786 919 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF124Q15973 351 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GARNL3Q5VVW2 1013 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TTBK2Q6IQ55 1244 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 C16orf62Q7Z3J2 963 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SNX20Q7Z614 316 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC103Q8IW40 242 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 BBS5Q8N3I7 341 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ASCC1Q8N9N2 400 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CIDECQ96AQ7 238 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZBED3Q96IU2 234 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF668Q96K58 619 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RBM4BQ9BQ04 359 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RBM4Q9BWF3 364 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ACTR3BQ9P1U1 418 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DCDC2Q9UHG0 476 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PI4KAP42356 2102 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ABCD4O14678 606 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PLOD3O60568 738 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PTPN6P29350 595 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CCNFP41002 786 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MAZP56270 477 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TAP2Q03519 686 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PKP1Q13835 747 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SGCAQ16586 387 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ALG11Q2TAA5 492 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 BEND6Q5SZJ8 279 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PCNX4Q63HM2 1172 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RDH13Q8NBN7 331 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TGFBRAP1Q8WUH2 860 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TCEAL3Q969E4 200 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 THUMPD1Q9NXG2 353 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 APOBEC2Q9Y235 224 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SQORQ9Y6N5 450 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PHF20L1A8MW92 1017 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NPIPA5E9PKD4 350 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NPIPA3F8WFD2 350 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 OIP5O43482 229 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SGCEO43556 437 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 FARP2O94887 1054 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ADH1CP00326 375 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TP53P04637 393 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZCCHC18P0CG32 403 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PPM1AP35813 382 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DHCR24Q15392 516 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SEC23BQ15437 767 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TCEA2Q15560 299 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF618Q5T7W0 954 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CARFQ8N187 725 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KBTBD3Q8NAB2 608 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 Q8NFD4 153 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PLBD2Q8NHP8 589 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TSPEARQ8WU66 669 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DNAJC9Q8WXX5 260 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 INTS12Q96CB8 462 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 WRNIP1Q96S55 665 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TARS2Q9BW92 718 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PRMT8Q9NR22 394 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DNAJB11Q9UBS4 358 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 LEF1Q9UJU2 399 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NPIPA1Q9UND3 350 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 EMILIN1Q9Y6C2 1016 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KIAA1549Q9HCM3 1950 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 I3L4J1 428 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ARHGAP6O43182 974 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CPEP16870 476 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 OMPP47874 163 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms