RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 CHID1Q9BWS9 393 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 SLC39A8Q9C0K1 460 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ELOVL6Q9H5J4 265 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 EMILIN3Q9NT22 766 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 OTOL1A6NHN0 477 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 M0QYT0 321 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 KATNA1O75449 491 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 SCO1O75880 301 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ZNF23P17027 643 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ARSEP51690 589 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PEX3P56589 373 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 GRIK3Q13003 919 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PRPF39Q86UA1 669 aaKnown RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ATP6V0D2Q8N8Y2 350 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PPP1R16AQ96I34 528 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 NSL1Q96IY1 281 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ZC3H10Q96K80 434 aaKnown RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ZNF354BQ96LW1 612 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PRMT1Q99873 361 aaKnown RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 SH3GLB2Q9NR46 395 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 GHRLQ9UBU3 117 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PCDHB6Q9Y5E3 794 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 IFT140Q96RY7 1462 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 BCAS1O75363 584 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ZNF682O95780 498 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 DBTP11182 482 aaKnown RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 RASGEF1BQ0VAM2 473 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PPIL2Q13356 520 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PGS1Q32NB8 556 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 UBXN11Q5T124 520 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 IRGCQ6NXR0 463 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 LYSMD3Q7Z3D4 306 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 IFNEQ86WN2 208 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 MRPS31Q92665 395 aaKnown RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 GPKOWQ92917 476 aaPredicted RBP eCLIP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 THOC1Q96FV9 657 aaKnown RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PDP2Q9P2J9 529 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PSMC3IPQ9P2W1 217 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-212ENST00000636194 TRAPPC8Q9Y2L5 1435 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 PI4KAP42356 2102 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 ABCC4O15439 1325 aa6.17□□□□□ -1.42
SCN1A-212ENST00000636194 C15orf38-AP3S2A0A0A6YYH1 394 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 PIGBOS1A0A0B4J2F0 54 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ENO4A6NNW6 628 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 MAGEB2O15479 319 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 AKAP8O43823 692 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 SPIRE1Q08AE8 756 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 MTAPQ13126 283 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 KRT31Q15323 416 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 AADACL4Q5VUY2 407 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 SLC22A9Q8IVM8 553 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 AADATQ8N5Z0 425 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ZNF615Q8N8J6 731 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 B3GALNT2Q8NCR0 500 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 SUN3Q8TAQ9 357 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 TMBIM4Q9HC24 238 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 CYLDQ9NQC7 956 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 PRRC2BQ5JSZ5 2229 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 TMEM120BA0PK00 339 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 GRAP2O75791 330 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 CDKL1Q00532 357 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 MYBPC1Q00872 1141 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 SPIDRQ14159 915 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ZBTB6Q15916 424 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 FAM196AQ6ZSG2 479 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 SRFBP1Q8NEF9 429 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 CPT1CQ8TCG5 803 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 C18orf8Q96DM3 657 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 IRX2Q9BZI1 471 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 PLEKHA1Q9HB21 404 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 RBAKQ9NYW8 714 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 PIN4Q9Y237 131 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 TPRKBQ9Y3C4 175 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 SCN1AP35498 2009 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 DENND4BO75064 1496 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 IRGMA1A4Y4 181 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 CLIC2O15247 247 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 KLHL41O60662 606 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 TNFRSF21O75509 655 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 BAIAP3O94812 1187 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 RPL3P39023 403 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ITGB3BPQ13352 177 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ARL6IP4Q66PJ3 421 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 BBS1Q8NFJ9 593 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 CPNE2Q96FN4 548 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ANKRD27Q96NW4 1050 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 GPN1Q9HCN4 374 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ENY2Q9NPA8 101 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 TIMMDC1Q9NPL8 285 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 PDGFCQ9NRA1 345 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 FAM153AQ9UHL3 310 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 AAR2Q9Y312 384 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 PCP4L1A6NKN8 68 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 EEF2KO00418 725 aaKnown RBP6.16□□□□□ -1.42
SCN1A-212ENST00000636194 GYS1P13807 737 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 RBP5P82980 135 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 INSCQ1MX18 579 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 CARD16Q5EG05 197 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 KLHL35Q6PF15 583 aa6.16□□□□□ -1.42
SCN1A-212ENST00000636194 ATG14Q6ZNE5 492 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms