RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SAC3D1A6NKF1 404 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 TPP1O14773 563 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 IRF6O14896 467 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 USP12O75317 370 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 DLDP09622 509 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 MAPTP10636 758 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 NPR1P16066 1061 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 MMP8P22894 467 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 FDFT1P37268 417 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 USP10Q14694 798 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 PDK1Q15118 436 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 PRKD1Q15139 912 aaPredicted RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 C11orf91Q3C1V1 193 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 RC3H1Q5TC82 1133 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 DPY19L2P1Q6NXN4 242 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 RSBN1LQ6PCB5 846 aaPredicted RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 BBS12Q6ZW61 710 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 RNF169Q8NCN4 708 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 ADAM32Q8TC27 787 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 ERLEC1Q96DZ1 483 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 CCDC90BQ9GZT6 254 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 FAM198AQ9UFP1 575 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 POLIQ9UNA4 740 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 MYH11P35749 1972 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 IGKV6D-41A0A0C4DH26 115 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 COX4I1P13073 169 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 LCP1P13796 627 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 ADORA2BP29275 332 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 PTK2BQ14289 1009 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 ZBTB41Q5SVQ8 909 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 TRMT10BQ6PF06 316 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 PHF13Q86YI8 300 aaPredicted RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 RTKN2Q8IZC4 609 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 PQLC1Q8N2U9 271 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 ANKLE1Q8NAG6 615 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 SYTL5Q8TDW5 730 aaPredicted RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 NKD2Q969F2 451 aaPredicted RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 DCUN1D1Q96GG9 259 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 CDHR1Q96JP9 859 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 SYT11Q9BT88 431 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 GLIS2Q9BZE0 524 aaPredicted RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 WDR55Q9H6Y2 383 aaPredicted RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 CDH22Q9UJ99 828 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 USP21Q9UK80 565 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 NENFQ9UMX5 172 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 E5RJQ4 531 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 SIN3BO75182 1162 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 ZNF189O75820 626 aaPredicted RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 TGDSO95455 350 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 BPGMP07738 259 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 EPHA3P29320 983 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 NME5P56597 212 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 PDAP1Q13442 181 aaKnown RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 ITPRIPL1Q6GPH6 555 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 ZBTB49Q6ZSB9 765 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 GPR141Q7Z602 305 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 C10orf107Q8IVU9 208 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 TDRD5Q8NAT2 981 aaKnown RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 ZDHHC15Q96MV8 337 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 MID2Q9UJV3 735 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 POMPQ9Y244 141 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 ASTN2O75129 1339 aaPredicted RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 ERVK-10P10266 1014 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 FGFR1P11362 822 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 NME3Q13232 169 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 CDHR3Q6ZTQ4 885 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 CMC1Q7Z7K0 106 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 DCAKDQ8WVC6 231 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 CGRRF1Q99675 332 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 GCOM2Q9BZD3 368 aaPredicted RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 EFCAB1Q9HAE3 211 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 CYLDQ9NQC7 956 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 TSC22D4Q9Y3Q8 395 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 CXorf49A8MYA2 514 aaPredicted RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 PRKCBP05771 671 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 ZBTB48P10074 688 aaPredicted RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 GRK2P25098 689 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 SPRP35270 261 aaPredicted RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 FSTL1Q12841 308 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 IGDCC3Q8IVU1 814 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 NUP93Q8N1F7 819 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 FAM156AQ8NDB6 213 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 FAM172AQ8WUF8 416 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 WRNIP1Q96S55 665 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 LIN28AQ9H9Z2 209 aaKnown RBP11.37□□□□□ -0.59
CLN3-244ENST00000636147 RRN3Q9NYV6 651 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 DCDC2Q9UHG0 476 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 AKT3Q9Y243 479 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 TMX2Q9Y320 296 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 GJA3Q9Y6H8 435 aa11.37□□□□□ -0.59
CLN3-244ENST00000636147 TRAFD1O14545 582 aaPredicted RBP11.36□□□□□ -0.59
CLN3-244ENST00000636147 POLBP06746 335 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 MGAT1P26572 445 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 CCR3P51677 355 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 GTF2A2P52657 109 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 ITKQ08881 620 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 SURF1Q15526 300 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 PPM1JQ5JR12 505 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 AAGABQ6PD74 315 aa11.36□□□□□ -0.59
CLN3-244ENST00000636147 TSPAN14Q8NG11 270 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms