RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 ABI3Q9P2A4 366 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ZNF624Q9P2J8 865 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 DBR1Q9UK59 544 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 PCDHB2Q9Y5E7 798 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 RBAK-RBAKDNI3L0D1 243 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CHP2O43745 196 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SNUPNO95149 360 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 COX7A2P14406 83 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ATP6V1B2P21281 511 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SARSP49591 514 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 PDIA5Q14554 519 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CHI3L2Q15782 390 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ZSWIM7Q19AV6 140 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 NECAB2Q7Z6G3 386 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TTLL2Q9BWV7 592 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 MRPL9Q9BYD2 267 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 DDX47Q9H0S4 455 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TLR7Q9NYK1 1049 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 KLK14Q9P0G3 267 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 KIAA1257Q9ULG3 409 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 WDR19Q8NEZ3 1342 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 DNMT1P26358 1616 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SLC12A8A0AV02 714 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TBC1D3BA6NDS4 549 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TBKBP1A7MCY6 615 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 NKRFO15226 690 aaKnown RBP eCLIP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ENDOD1O94919 500 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 HSD3B2P26439 372 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 NTSP30990 170 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ARF5P84085 180 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SMCO1Q147U7 214 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SMTNL2Q2TAL5 461 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 FBXL19Q6PCT2 694 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 BRSK2Q8IWQ3 736 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 OR52L1Q8NGH7 329 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CXorf40AQ8TE69 158 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SGSM3Q96HU1 749 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 HTATIP2Q9BUP3 242 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 GANQ9H2C0 597 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 MANSC1Q9H8J5 431 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 RBP1P09455 135 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CCDC166P0CW27 439 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 COPAP53621 1224 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 BCAT1P54687 386 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TRAF2Q12933 501 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ZNF57Q68EA5 555 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 PRR5LQ6MZQ0 368 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TMEM26Q6ZUK4 368 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 USP45Q70EL2 814 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 NANOGNBQ7Z5D8 188 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TMEM132CQ8N3T6 1108 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 FEZF2Q8TBJ5 459 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CAPSLQ8WWF8 208 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 KCTD14Q9BQ13 255 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 NIF3L1Q9GZT8 377 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ATXN3LQ9H3M9 355 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 MROH8Q9H579 483 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 MGAT4AQ9UM21 535 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 DUSP12Q9UNI6 340 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SHANK2Q9UPX8 1470 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 LINC00854A0A1B0GVQ3 168 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 H3BN98 237 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 XPO1O14980 1071 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 KATNA1O75449 491 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 TPBGLP0DKB5 382 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 FMO5P49326 533 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 NFYCQ13952 458 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 AMHR2Q16671 573 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 LIN54Q6MZP7 749 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ZNF786Q8N393 782 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SMYD1Q8NB12 490 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 GPT2Q8TD30 523 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 UTP15Q8TED0 518 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 PANX3Q96QZ0 392 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 DSN1Q9H410 356 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 EFCAB1Q9HAE3 211 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 MRTO4Q9UKD2 239 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ADGRA3Q8IWK6 1321 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 GOLGA4Q13439 2230 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 EFCAB10A6NFE3 127 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 MCIDASD6RGH6 385 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 SGTAO43765 313 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ZNF862O60290 1169 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 PRDX5P30044 214 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 GTF2H1P32780 548 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CLK2P49760 499 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 MRPS25P82663 173 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 EXOSC10Q01780 885 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 PTSQ03393 145 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CRYMQ14894 314 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 FAM228AQ86W67 206 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 E2F7Q96AV8 911 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 FAM120BQ96EK7 910 aaKnown RBP5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CDADC1Q9BWV3 514 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 RIBC2Q9H4K1 309 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 CAB39LQ9H9S4 337 aa5.7□□□□□ -1.5
SCN1A-209ENST00000635750 ANKDD1BA6NHY2 528 aa5.69□□□□□ -1.5
SCN1A-209ENST00000635750 SLCO1B7G3V0H7 640 aa5.69□□□□□ -1.5
SCN1A-209ENST00000635750 H3BNH8 94 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms