RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ACOT8O14734 319 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 TMIGD3P0DMS9 266 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 TMEM225BP0DP42 221 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 BRAFP15056 766 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 ST6GAL1P15907 406 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 ZKSCAN1P17029 563 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 ACVR2AP27037 513 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 ARRB2P32121 409 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 POLD2P49005 469 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 CPT1AP50416 773 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 AGFG1P52594 562 aaKnown RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 FHL3Q13643 280 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 NFATC4Q14934 902 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 B3GNT9Q6UX72 402 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 NPNTQ6UXI9 565 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 RBM44Q6ZP01 1051 aaKnown RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 TRAPPC11Q7Z392 1133 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 UEVLDQ8IX04 471 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 FSTL5Q8N475 847 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 IQCF1Q8N6M8 205 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 TRIM43Q96BQ3 446 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 MED30Q96HR3 178 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 ZCWPW1Q9H0M4 648 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 FAM83DQ9H4H8 585 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 STK32BQ9NY57 414 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 CPNE7Q9UBL6 633 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 PNMA8BQ9ULN7 279 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 SLC27A6Q9Y2P4 619 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 TCF20Q9UGU0 1960 aaKnown RBP3.5□□□□□ -1.85
SCN1A-208ENST00000625916 TRBV5-3A0A0A0MS03 114 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 PRPF4O43172 522 aaKnown RBP eCLIP3.49□□□□□ -1.85
SCN1A-208ENST00000625916 MYBP10242 640 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 FGF3P11487 239 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-208ENST00000625916 HOXB2P14652 356 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 TFEBP19484 476 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 RBL1P28749 1068 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 VPS41P49754 854 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 CNGA3Q16281 694 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 MAEAQ7L5Y9 396 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 NR2C2APQ86WQ0 139 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 YAF2Q8IY57 180 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 ZBTB34Q8NCN2 500 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 SLC35G2Q8TBE7 412 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 NUDCD2Q8WVJ2 157 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 NEUROG1Q92886 237 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 MIB2Q96AX9 1013 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 PRR11Q96HE9 360 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-208ENST00000625916 AIFM3Q96NN9 605 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 SF3B5Q9BWJ5 86 aaKnown RBP3.49□□□□□ -1.85
SCN1A-208ENST00000625916 B3GNT5Q9BYG0 378 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 MOV10Q9HCE1 1003 aaKnown RBP3.49□□□□□ -1.85
SCN1A-208ENST00000625916 FZD3Q9NPG1 666 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 VPS45Q9NRW7 570 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 SEMA5BQ9P283 1151 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 DNAJB11Q9UBS4 358 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 MID2Q9UJV3 735 aa3.49□□□□□ -1.85
SCN1A-208ENST00000625916 CAPN8A6NHC0 703 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 C16orf96A6NNT2 1141 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 MLH1P40692 756 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 RAE1P78406 368 aaKnown RBP3.48□□□□□ -1.85
SCN1A-208ENST00000625916 KCNAB1Q14722 419 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 CLCA4Q14CN2 919 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 C3orf38Q5JPI3 329 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 DGKKQ5KSL6 1271 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 NUGGCQ68CJ6 796 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 SKAP1Q86WV1 359 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 SPATA2LQ8IUW3 424 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-208ENST00000625916 DNASE2BQ8WZ79 361 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 NMD3Q96D46 503 aaKnown RBP3.48□□□□□ -1.85
SCN1A-208ENST00000625916 TAAR9Q96RI9 348 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 SAP30LQ9HAJ7 183 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 THSD1Q9NS62 852 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 AFF4Q9UHB7 1163 aaKnown RBP3.48□□□□□ -1.85
SCN1A-208ENST00000625916 AGO2Q9UKV8 859 aaKnown RBP3.48□□□□□ -1.85
SCN1A-208ENST00000625916 VPS4AQ9UN37 437 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 PCDHA7Q9UN72 937 aa3.48□□□□□ -1.85
SCN1A-208ENST00000625916 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 CFAP69A5D8W1 941 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 FAM227AF5H4B4 570 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 H0YGN5 161 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 TNFRSF13BO14836 293 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 SPTLC2O15270 562 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 TUSC2O75896 110 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 INMTO95050 263 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 GAS8-AS1O95177 125 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 IGKV3-20P01619 116 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 MBPP02686 304 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 SLC3A2P08195 630 aaKnown RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 IDUAP35475 653 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 ENTPD1P49961 510 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 COPAP53621 1224 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 RPS16P62249 146 aaKnown RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 DNASE1L3Q13609 305 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 DLGAP5Q15398 846 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 ODF3L2Q3SX64 289 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 C9orf50Q5SZB4 431 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 GRHL2Q6ISB3 625 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 MZT2AQ6P582 158 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 OIT3Q8WWZ8 545 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms