RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ADH1CP00326 375 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 EGFP01133 1207 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 TBXAS1P24557 533 aaPredicted RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 MSNP26038 577 aaKnown RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 ATP5C1P36542 298 aaKnown RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 EIF2DP41214 584 aaKnown RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 KIF11P52732 1056 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 RAD23BP54727 409 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 SLC8A3P57103 927 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 DHCR24Q15392 516 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 ZNF394Q53GI3 561 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 PPP1R26Q5T8A7 1209 aaPredicted RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 ARHGAP17Q68EM7 881 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 KLHDC10Q6PID8 442 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 ZNF571Q7Z3V5 609 aaPredicted RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 WDR5BQ86VZ2 330 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 ZNF276Q8N554 614 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 CAMKK1Q8N5S9 505 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 SLC4A11Q8NBS3 891 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 ZFRQ96KR1 1074 aaKnown RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 FAM81BQ96LP2 452 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 HINFPQ9BQA5 517 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 CCSER2Q9H7U1 834 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 CYLDQ9NQC7 956 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 KIAA1257Q9ULG3 409 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 SMG5Q9UPR3 1016 aaKnown RBP13.27□□□□□ -0.29
PNKP-217ENST00000625216 SLC8A2Q9UPR5 921 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 SH3BP1Q9Y3L3 701 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 ADGRG1Q9Y653 693 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 USP3Q9Y6I4 520 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 DENND4CQ5VZ89 1909 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 WDR87Q6ZQQ6 2873 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 A0A0U1RQJ8 604 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CYP26A1O43174 497 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CALCAP01258 141 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CYP17A1P05093 508 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 PTPRDP23468 1912 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CLCN1P35523 988 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CYLC1P35663 651 aaPredicted RBP13.26□□□□□ -0.29
PNKP-217ENST00000625216 USP8P40818 1118 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 FNTBP49356 437 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 PTK2Q05397 1052 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 PREPLQ4J6C6 727 aaPredicted RBP13.26□□□□□ -0.29
PNKP-217ENST00000625216 RHBDF2Q6PJF5 856 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 GPR179Q6PRD1 2367 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 HTR3DQ70Z44 454 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 SYT13Q7L8C5 426 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 TADA2BQ86TJ2 420 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CCDC170Q8IYT3 715 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CCAR2Q8N163 923 aaKnown RBP13.26□□□□□ -0.29
PNKP-217ENST00000625216 ANKRD52Q8NB46 1076 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 SLC20A1Q8WUM9 679 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 ACDQ96AP0 544 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CDK5RAP1Q96SZ6 601 aaKnown RBP13.26□□□□□ -0.29
PNKP-217ENST00000625216 ACP6Q9NPH0 428 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 KCND1Q9NSA2 647 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CLIC5Q9NZA1 410 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 NCDNQ9UBB6 729 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 NOCTQ9UK39 431 aaKnown RBP13.26□□□□□ -0.29
PNKP-217ENST00000625216 NENFQ9UMX5 172 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 CNTN6Q9UQ52 1028 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 PPP2R2CQ9Y2T4 447 aa13.26□□□□□ -0.29
PNKP-217ENST00000625216 EPN1Q9Y6I3 576 aaPredicted RBP13.26□□□□□ -0.29
PNKP-217ENST00000625216 GREB1Q4ZG55 1949 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 PATJQ8NI35 1801 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 A0A0A0MRY4 1105 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 EIF3CLB5ME19 914 aaKnown RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 HRO43593 1189 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 KRT5P13647 590 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 OPRD1P41143 372 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 PLA2G4AP47712 749 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 ZNF132P52740 706 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 GAD2Q05329 585 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 LAIR1Q6GTX8 287 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 GPRIN1Q7Z2K8 1008 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 NOP9Q86U38 636 aaKnown RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 FMNL3Q8IVF7 1028 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 REXO1L1PQ8IX06 675 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 ARHGAP18Q8N392 663 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 RBBP8NLQ8NC74 664 aaPredicted RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 EPS8L1Q8TE68 723 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 JAKMIP2Q96AA8 810 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 PPP1R13BQ96KQ4 1090 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 CCDC42Q96M95 316 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 PNKPQ96T60 521 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 EIF3CQ99613 913 aaKnown RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 KLF16Q9BXK1 252 aaPredicted RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 DEF6Q9H4E7 631 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.25□□□□□ -0.29
PNKP-217ENST00000625216 C2orf42Q9NWW7 574 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 TRMT1Q9NXH9 659 aaKnown RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 DNMT3LQ9UJW3 386 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 GMEB2Q9UKD1 530 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 PCDHB4Q9Y5E5 795 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 OTOGLQ3ZCN5 2332 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 KIF26AQ9ULI4 1882 aaPredicted RBP13.25□□□□□ -0.29
PNKP-217ENST00000625216 ZNF292O60281 2723 aa13.25□□□□□ -0.29
PNKP-217ENST00000625216 A0A087X0T9 212 aa13.24□□□□□ -0.29
PNKP-217ENST00000625216 DDX3XO00571 662 aaKnown RBP eCLIP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms