RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 E7ENQ6 273 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 GREM1O60565 184 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 RNF40O75150 1001 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 STC2O76061 302 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 HMBSP08397 361 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 NRLP54845 237 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 PPP2R5DQ14738 602 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 N4BP2L1Q5TBK1 243 aaPredicted RBP16.74■□□□□ 0.27
BRCA1-228ENST00000618469 PKN3Q6P5Z2 889 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 RHBDF2Q6PJF5 856 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 C12orf40Q86WS4 652 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 SCML4Q8N228 414 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 ZNF276Q8N554 614 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 CLEC4CQ8WTT0 213 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 ZNF606Q8WXB4 792 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 EDEM1Q92611 657 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 HSFY1Q96LI6 401 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 MARCH2Q9P0N8 246 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 MYOFQ9NZM1 2061 aa16.74■□□□□ 0.27
BRCA1-228ENST00000618469 SLC12A8A0AV02 714 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 GABBR2O75899 941 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 GPD2P43304 727 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 CXCL12P48061 93 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 KDSRQ06136 332 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 KCNMA1Q12791 1236 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 SF3A2Q15428 464 aaKnown RBP16.73■□□□□ 0.27
BRCA1-228ENST00000618469 CSRP2Q16527 193 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 MEA1Q16626 185 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 ANO4Q32M45 955 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 ANO6Q4KMQ2 910 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 BSPRYQ5W0U4 402 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 HTR3DQ70Z44 454 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 AOPEPQ8N6M6 819 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 ANKRD20A12PQ8NF67 263 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 RNF139Q8WU17 664 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 EZH1Q92800 747 aaPredicted RBP16.73■□□□□ 0.27
BRCA1-228ENST00000618469 MIS12Q9H081 205 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 SPHK2Q9NRA0 654 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 RXFP3Q9NSD7 469 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 OLA1Q9NTK5 396 aaKnown RBP16.73■□□□□ 0.27
BRCA1-228ENST00000618469 ATG2BQ96BY7 2078 aa16.73■□□□□ 0.27
BRCA1-228ENST00000618469 HOXC11O43248 304 aaPredicted RBP16.72■□□□□ 0.27
BRCA1-228ENST00000618469 FBXO21O94952 628 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 CORO1AP31146 461 aaKnown RBP16.72■□□□□ 0.27
BRCA1-228ENST00000618469 COG7P83436 770 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 GAD2Q05329 585 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 COL9A2Q14055 689 aaPredicted RBP16.72■□□□□ 0.27
BRCA1-228ENST00000618469 FBXO43Q4G163 708 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 FKBP15Q5T1M5 1219 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 KLHDC7AQ5VTJ3 777 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 DPY19L2P1Q6NXN4 242 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 Q6ZNB5 142 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 PASD1Q8IV76 773 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 FMNL3Q8IVF7 1028 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 IRGQQ8WZA9 623 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 GOLGA1Q92805 767 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 ABCC13Q9NSE7 274 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 ANGPTL2Q9UKU9 493 aa16.72■□□□□ 0.27
BRCA1-228ENST00000618469 E5RJQ4 531 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 NEDD8-MDP1E9PL57 170 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 AXIN1O15169 862 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 MSI1O43347 362 aaKnown RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 LTFP02788 710 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 HOXB3P14651 431 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 UCHL3P15374 230 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 EIF2DP41214 584 aaKnown RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 ACADSBP45954 432 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 SLC6A11P48066 632 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 COPB1P53618 953 aaKnown RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 SEC13P55735 322 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 PTK2Q05397 1052 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 PDCLQ13371 301 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 DRAP1Q14919 205 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 NCAPHQ15003 741 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 AASDHQ4L235 1098 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 IL31Q6EBC2 164 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 MAMSTRQ6ZN01 415 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 TPGS1Q6ZTW0 290 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 CEP68Q76N32 757 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 SLC47A2Q86VL8 602 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 TMEM25Q86YD3 366 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 FAM160A2Q8N612 972 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 NAT16Q8N8M0 369 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 RPLP0P6Q8NHW5 317 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 FAM149B1Q96BN6 582 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 PLD4Q96BZ4 506 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 PNKPQ96T60 521 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 BBS2Q9BXC9 721 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 NAT10Q9H0A0 1025 aaKnown RBP16.71■□□□□ 0.27
BRCA1-228ENST00000618469 SMOC1Q9H4F8 434 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 ARHGEF4Q9NR80 690 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 SFMBT1Q9UHJ3 866 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 CYTH4Q9UIA0 394 aa16.71■□□□□ 0.27
BRCA1-228ENST00000618469 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.7■□□□□ 0.26
BRCA1-228ENST00000618469 FOXN3O00409 490 aaPredicted RBP16.7■□□□□ 0.26
BRCA1-228ENST00000618469 SART1O43290 800 aaKnown RBP16.7■□□□□ 0.26
BRCA1-228ENST00000618469 PAPSS2O95340 614 aaPredicted RBP16.7■□□□□ 0.26
BRCA1-228ENST00000618469 KLKB1P03952 638 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 APODP05090 189 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 CLCN1P35523 988 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms