RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 DCNP07585 359 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 GLI1P08151 1106 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 FERP16591 822 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 MMP8P22894 467 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 PRKCIP41743 596 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 KPNA1P52294 538 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 COG7P83436 770 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 CENPCQ03188 943 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 ARID5AQ03989 594 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 TMEM196Q5HYL7 178 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 NAA35Q5VZE5 725 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 TRNP1Q6NT89 227 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 SLC26A9Q7LBE3 791 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 C12orf40Q86WS4 652 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 CPA6Q8N4T0 437 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 ZNF397Q8NF99 534 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 SLC39A13Q96H72 371 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 RBSNQ9H1K0 784 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 POPDC2Q9HBU9 364 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 CALCOCO1Q9P1Z2 691 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 TBC1D14Q9P2M4 693 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 STOML2Q9UJZ1 356 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 AGO1Q9UL18 857 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 SIT1Q9Y3P8 196 aa20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 HBS1LQ9Y450 684 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-221ENST00000599833 SLC9A3R1O14745 358 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 HMBSP08397 361 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 NCAM1P13591 858 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 YWHAZP63104 245 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 SLC6A3Q01959 620 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 CCINQ13939 588 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 GAS6Q14393 721 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 CLEC16AQ2KHT3 1053 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 LY6G5CQ5SRR4 150 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 FSTL4Q6MZW2 842 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 RSRC2Q7L4I2 434 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 TAC4Q86UU9 113 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 TMEM25Q86YD3 366 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 SUGP1Q8IWZ8 645 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 ETFBKMTQ8IXQ9 262 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 PHTF2Q8N3S3 785 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 RNF139Q8WU17 664 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 PLD4Q96BZ4 506 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 AGPAT1Q99943 283 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 RAPGEFL1Q9UHV5 662 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 CEP83Q9Y592 693 aa20.36■□□□□ 0.85
SHKBP1-221ENST00000599833 ATG2BQ96BY7 2078 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 HOXC11O43248 304 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 CORO1AP31146 461 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 SCNN1AP37088 669 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 UBXN2BQ14CS0 331 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 PON2Q15165 354 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 HGSNATQ68CP4 663 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 C1orf228Q6PIY5 440 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 TRIM72Q6ZMU5 477 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 SLC30A5Q8TAD4 765 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 FAM149B1Q96BN6 582 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 C18orf8Q96DM3 657 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 FCRL2Q96LA5 508 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 NOX5Q96PH1 765 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 NELL2Q99435 816 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 SPHK2Q9NRA0 654 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 MARK1Q9P0L2 795 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 TMEM59LQ9UK28 342 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 CAPN11Q9UMQ6 739 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 NDRG2Q9UN36 371 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 FRYLO94915 3013 aa20.35■□□□□ 0.85
SHKBP1-221ENST00000599833 TCRBV5S1A1TA0A578 114 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 ANTXRLA6NF34 631 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 IRAK2O43187 625 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 HSF2BPO75031 334 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 DAB1O75553 588 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 GRAP2O75791 330 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 RPS9P46781 194 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 GALK1P51570 392 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 GSCP56915 257 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 RING1Q06587 406 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 NNTQ13423 1086 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 OR6B2Q6IFH4 312 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 SARM1Q6SZW1 724 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 MMS22LQ6ZRQ5 1243 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 ZNF571Q7Z3V5 609 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 BNIPLQ7Z465 357 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 ERICH1Q86X53 443 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 PHF13Q86YI8 300 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 ZDHHC17Q8IUH5 632 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 DEFB106AQ8N104 65 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 PRSS33Q8NF86 280 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 ADAM32Q8TC27 787 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 IPO4Q8TEX9 1081 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 NT5C3BQ969T7 300 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 NUP58Q9BVL2 599 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 RBM12Q9NTZ6 932 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 TAS2R14Q9NYV8 317 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 STRIP2Q9ULQ0 834 aa20.34■□□□□ 0.85
SHKBP1-221ENST00000599833 TFE3P19532 575 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-221ENST00000599833 SLC6A11P48066 632 aa20.33■□□□□ 0.85
SHKBP1-221ENST00000599833 GOLGA8FQ08AF8 430 aa20.33■□□□□ 0.85
SHKBP1-221ENST00000599833 GOLGA8DPQ0D2H9 430 aa20.33■□□□□ 0.85
SHKBP1-221ENST00000599833 EFHC1Q5JVL4 640 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms