RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CHKAP35790 457 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 SLC6A11P48066 632 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 BPIFB4P59827 614 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 KDSRQ06136 332 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 PDCLQ13371 301 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 RAPGEF1Q13905 1077 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 TRIP4Q15650 581 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-206ENST00000595974 FKBP15Q5T1M5 1219 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 SYT13Q7L8C5 426 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 FMNL3Q8IVF7 1028 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 FAM71AQ8IYT1 594 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 PHTF2Q8N3S3 785 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 USP33Q8TEY7 942 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 XPO6Q96QU8 1125 aaKnown RBP16.94■□□□□ 0.3
TRIM28-206ENST00000595974 TRIM62Q9BVG3 475 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 MIS12Q9H081 205 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 VPS16Q9H269 839 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 EPC1Q9H2F5 836 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 PLCB1Q9NQ66 1216 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 DEC1Q9P2X7 70 aa16.94■□□□□ 0.3
TRIM28-206ENST00000595974 A0A0A0MRY4 1105 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 TYRP14679 529 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 TNFRSF4P43489 277 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 MRPS21P82921 87 aaKnown RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 MESP2Q0VG99 397 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 DRAP1Q14919 205 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 HSF5Q4G112 596 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 GRAMD4Q6IC98 578 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 CAVIN1Q6NZI2 390 aaKnown RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 TPGS1Q6ZTW0 290 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 NUDT18Q6ZVK8 323 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 BEND5Q7L4P6 421 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 TMEM110Q86TL2 294 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 LONP2Q86WA8 852 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 DENND1CQ8IV53 801 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 FAM217AQ8IXS0 508 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 CPXM2Q8N436 756 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 NAT16Q8N8M0 369 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 TERB1Q8NA31 727 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 NAA15Q9BXJ9 866 aaKnown RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 NAT10Q9H0A0 1025 aaKnown RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 LHX5Q9H2C1 402 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 DNAJC17Q9NVM6 304 aaKnown RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 LIMA1Q9UHB6 759 aaKnown RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 CYTH4Q9UIA0 394 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 AGO1Q9UL18 857 aaKnown RBP16.93■□□□□ 0.3
TRIM28-206ENST00000595974 DAAM1Q9Y4D1 1078 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 CEP83Q9Y592 693 aa16.93■□□□□ 0.3
TRIM28-206ENST00000595974 CCDC163A0A0D9SF12 145 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 E5RJQ4 531 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 LATS1O95835 1130 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 PNMA6AP0CW24 399 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-206ENST00000595974 ZNF18P17022 549 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 CNR2P34972 360 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 CLCN1P35523 988 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 KRT9P35527 623 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 FNTBP49356 437 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 HARS2P49590 506 aaKnown RBP16.92■□□□□ 0.3
TRIM28-206ENST00000595974 COPB1P53618 953 aaKnown RBP16.92■□□□□ 0.3
TRIM28-206ENST00000595974 SEC13P55735 322 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 DMC1Q14565 340 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 NCAPHQ15003 741 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 SLC47A2Q86VL8 602 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 WDR5BQ86VZ2 330 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 SCUBE3Q8IX30 993 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 CAMKK1Q8N5S9 505 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 SUMF1Q8NBK3 374 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 FAM149B1Q96BN6 582 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 NOX5Q96PH1 765 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 GANQ9H2C0 597 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 SFMBT1Q9UHJ3 866 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 MMP17Q9ULZ9 603 aa16.92■□□□□ 0.3
TRIM28-206ENST00000595974 LGALS16A8MUM7 142 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 F8VZ95 297 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 PAPSS1O43252 624 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-206ENST00000595974 MSI1O43347 362 aaKnown RBP16.91■□□□□ 0.3
TRIM28-206ENST00000595974 PENKP01210 267 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-206ENST00000595974 IGLV3-27P01718 113 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 CHRM1P11229 460 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-206ENST00000595974 ZNF445P59923 1031 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 RING1Q06587 406 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 DMWDQ09019 674 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 NNTQ13423 1086 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 C2orf27AQ580R0 203 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 HEATR6Q6AI08 1181 aaKnown RBP16.91■□□□□ 0.3
TRIM28-206ENST00000595974 PASD1Q8IV76 773 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 SFTPA1Q8IWL2 248 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 AOPEPQ8N6M6 819 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 SERPINB11Q96P15 392 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 BPIFA3Q9BQP9 254 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 STK33Q9BYT3 514 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 SMG5Q9UPR3 1016 aaKnown RBP16.91■□□□□ 0.3
TRIM28-206ENST00000595974 CFAP54Q96N23 3096 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 RALGAPA1Q6GYQ0 2036 aa16.91■□□□□ 0.3
TRIM28-206ENST00000595974 TBC1D3BA6NDS4 549 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 APBB3O95704 486 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 CYBBP04839 570 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 FYNP06241 537 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 NCAM1P13591 858 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 PTMSP20962 102 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms