RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 MAPK13O15264 365 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 XPOTO43592 962 aaKnown RBP13.57□□□□□ -0.24
SCAF1-202ENST00000595242 ADAM23O75077 832 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 TADA3O75528 432 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 NOL4O94818 638 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 LCA5LO95447 670 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 AFPP02771 609 aaKnown RBP13.57□□□□□ -0.24
SCAF1-202ENST00000595242 CYP11A1P05108 521 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 CSH1P0DML2 217 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 CSH2P0DML3 217 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 PSMC2P35998 433 aaKnown RBP13.57□□□□□ -0.24
SCAF1-202ENST00000595242 ARHGAP25P42331 645 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 GPR15P49685 360 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 KCNH2Q12809 1159 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 EMC10Q5UCC4 262 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 THEM5Q8N1Q8 247 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 ACRBPQ8NEB7 543 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 SH3RF2Q8TEC5 729 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 SPIRE2Q8WWL2 714 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 ZNF592Q92610 1267 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 SLC35C1Q96A29 364 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 GANQ9H2C0 597 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 MMRN2Q9H8L6 949 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 ZDHHC4Q9NPG8 344 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 PCOLCE2Q9UKZ9 415 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 MYO6Q9UM54 1294 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 DAAM1Q9Y4D1 1078 aa13.57□□□□□ -0.24
SCAF1-202ENST00000595242 SPTA1P02549 2419 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 SSU72P8A0A1W2PR75 194 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 LACTBL1A8MY62 500 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 J3QKU1 62 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 K7ENM7 598 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 SLC16A4O15374 487 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 CLDN3O15551 220 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 CLTAP09496 248 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 CHRM1P11229 460 aaPredicted RBP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 TNFSF9P41273 254 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 MATR3P43243 847 aaKnown RBP eCLIP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 SLC6A11P48066 632 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 KRT83P78385 493 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 STRN3Q13033 797 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 MAPK8IP2Q13387 824 aaPredicted RBP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 SDHAF4Q5VUM1 108 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 METTL23Q86XA0 190 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 SLC41A1Q8IVJ1 513 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 ARL14EPQ8N8R7 260 aaPredicted RBP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 LSM14AQ8ND56 463 aaKnown RBP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 SETD7Q8WTS6 366 aaKnown RBP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 HSPA12BQ96MM6 686 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 ACCSQ96QU6 501 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 PNKPQ96T60 521 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 HAUS4Q9H6D7 363 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 FAM207AQ9NSI2 230 aaPredicted RBP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 UXTQ9UBK9 157 aaPredicted RBP13.56□□□□□ -0.24
SCAF1-202ENST00000595242 DNAI1Q9UI46 699 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 DSEQ9UL01 958 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 PCDHB5Q9Y5E4 795 aa13.56□□□□□ -0.24
SCAF1-202ENST00000595242 LRRC53A6NM62 1247 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 KAT7O95251 611 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 APODP05090 189 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 SCP2P22307 547 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 PAX3P23760 479 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 ABCD1P33897 745 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 KIR2DL1P43626 348 aaPredicted RBP13.55□□□□□ -0.24
SCAF1-202ENST00000595242 CASP4P49662 377 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 MCL1Q07820 350 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 MESP2Q0VG99 397 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 CAMK2BQ13554 666 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 C9orf57Q5W0N0 161 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 FAM186BQ8IYM0 893 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 RGL4Q8IZJ4 473 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 GALNT15Q8N3T1 639 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 SPATA18Q8TC71 538 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 NTPCRQ9BSD7 190 aaKnown RBP13.55□□□□□ -0.24
SCAF1-202ENST00000595242 PI4K2AQ9BTU6 479 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 HAPLN2Q9GZV7 340 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 FAM124BQ9H5Z6 455 aaPredicted RBP13.55□□□□□ -0.24
SCAF1-202ENST00000595242 PRORYQ9H606 182 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 NHEJ1Q9H9Q4 299 aaPredicted RBP13.55□□□□□ -0.24
SCAF1-202ENST00000595242 TOR4AQ9NXH8 423 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 GCNT4Q9P109 453 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 ARHGAP20Q9P2F6 1191 aa13.55□□□□□ -0.24
SCAF1-202ENST00000595242 A0A0A0MRY4 1105 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 C2orf78A6NCI8 922 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 PIRO00625 290 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 CYB561D2O14569 222 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 CLIC2O15247 247 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 KIF5CO60282 957 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 SLU7O95391 586 aaKnown RBP13.54□□□□□ -0.24
SCAF1-202ENST00000595242 CYP17A1P05093 508 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 ATXN1LP0C7T5 689 aaKnown RBP13.54□□□□□ -0.24
SCAF1-202ENST00000595242 TCF3P15923 654 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 GABRG2P18507 467 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 HDCP19113 662 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 ITPKBP27987 946 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 GNG11P61952 73 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 GRIK2Q13002 908 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 DDR2Q16832 855 aa13.54□□□□□ -0.24
SCAF1-202ENST00000595242 ASTE1Q2TB18 679 aaPredicted RBP13.54□□□□□ -0.24
SCAF1-202ENST00000595242 HGSNATQ68CP4 663 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms