RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FBXO44Q9H4M3 255 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 THAP9Q9H5L6 903 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 TMEM9BQ9NQ34 198 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 DNAJC17Q9NVM6 304 aaKnown RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 PLK2Q9NYY3 685 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 WASH3PC4AMC7 463 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 PRRT4C9JH25 899 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 P4HA2O15460 535 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 RARGP13631 454 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 TYRP14679 529 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 ITPKAP23677 461 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 FMO5P49326 533 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 CETN1Q12798 172 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 ZNF394Q53GI3 561 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 PPP1R26Q5T8A7 1209 aaPredicted RBP13.14□□□□□ -0.31
UPF1-203ENST00000594504 GRAMD4Q6IC98 578 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 KIAA1211LQ6NV74 962 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 FAM114A1Q8IWE2 563 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 TERB1Q8NA31 727 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 SEMA4DQ92854 862 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 BHMTQ93088 406 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 SPACA7Q96KW9 195 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 BBS2Q9BXC9 721 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 SLC6A17Q9H1V8 727 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 CYP3A43Q9HB55 503 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 SCML2Q9UQR0 700 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.14□□□□□ -0.31
UPF1-203ENST00000594504 RAD54BQ9Y620 910 aa13.14□□□□□ -0.31
UPF1-203ENST00000594504 A0A1W2PQF6 199 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 AFPP02771 609 aaKnown RBP13.13□□□□□ -0.31
UPF1-203ENST00000594504 CISD3P0C7P0 127 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 HOXB2P14652 356 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 NTSR1P30989 418 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 MAPK8P45983 427 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 SHC2P98077 582 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 INCA1Q0VD86 236 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 KCNH2Q12809 1159 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 FOXC1Q12948 553 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 SCD5Q86SK9 330 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 IRF2BP1Q8IU81 584 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 DEFB124Q8NES8 71 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 ENOX1Q8TC92 643 aaKnown RBP13.13□□□□□ -0.31
UPF1-203ENST00000594504 NT5C1AQ9BXI3 368 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 CD93Q9NPY3 652 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 CYLDQ9NQC7 956 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.13□□□□□ -0.31
UPF1-203ENST00000594504 CALCOCO1Q9P1Z2 691 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 STARD13Q9Y3M8 1113 aa13.13□□□□□ -0.31
UPF1-203ENST00000594504 C1QTNF9BB2RNN3 333 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 CILPO75339 1184 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 LETM1O95202 739 aaPredicted RBP13.12□□□□□ -0.31
UPF1-203ENST00000594504 HMBSP08397 361 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 C1QTNF9P0C862 333 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 ENGP17813 658 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 PLA2G4AP47712 749 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 KIF11P52732 1056 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 RPL6Q02878 288 aaKnown RBP13.12□□□□□ -0.31
UPF1-203ENST00000594504 ZNF252P-AS1Q0IIN9 211 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 C10orf120Q5SQS8 335 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 LYSMD4Q5XG99 296 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 CREBRFQ8IUR6 639 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 SYT12Q8IV01 421 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 CHPFQ8IZ52 775 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 TTC39CQ8N584 583 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 IPO4Q8TEX9 1081 aaKnown RBP13.12□□□□□ -0.31
UPF1-203ENST00000594504 HEXIM2Q96MH2 286 aaKnown RBP13.12□□□□□ -0.31
UPF1-203ENST00000594504 XPO6Q96QU8 1125 aaKnown RBP13.12□□□□□ -0.31
UPF1-203ENST00000594504 NUSAP1Q9BXS6 441 aaKnown RBP13.12□□□□□ -0.31
UPF1-203ENST00000594504 DUSP16Q9BY84 665 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 FAM124BQ9H5Z6 455 aaPredicted RBP13.12□□□□□ -0.31
UPF1-203ENST00000594504 CD248Q9HCU0 757 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 NAGPAQ9UK23 515 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 PILRBQ9UKJ0 227 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 CYP8B1Q9UNU6 501 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 SPTBN2O15020 2390 aa13.12□□□□□ -0.31
UPF1-203ENST00000594504 PLXND1Q9Y4D7 1925 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 NCOR2Q9Y618 2525 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 IGHV1OR15-9A0A0B4J2B8 117 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 CACNG3O60359 315 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 STC2O76061 302 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 KLKB1P03952 638 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 CFIP05156 583 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 NDUFV2P19404 249 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 TRIM21P19474 475 aaKnown RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 MTIF2P46199 727 aaKnown RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 DGKGP49619 791 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 TYRO3Q06418 890 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 BYSLQ13895 437 aaKnown RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 SKOR2Q2VWA4 1001 aaPredicted RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 PREPLQ4J6C6 727 aaPredicted RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 SLC23A3Q6PIS1 610 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 Q6ZNB5 142 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 C11orf57Q6ZUT1 292 aaPredicted RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 NUDT18Q6ZVK8 323 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 TRMT11Q7Z4G4 463 aaKnown RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 SLC41A1Q8IVJ1 513 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 OR2I1PQ8NGU4 316 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 KCNV2Q8TDN2 545 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 NDRG1Q92597 394 aaKnown RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 TATDN2Q93075 761 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms