RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 SPDYCQ5MJ68 293 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 TXNRD3NBQ6F5E7 133 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 PDE12Q6L8Q7 609 aaKnown RBP9.66□□□□□ -0.86
SS18-220ENST00000582092 LRIG3Q6UXM1 1119 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 ZNF280BQ86YH2 543 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 SCN4BQ8IWT1 228 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 COLGALT2Q8IYK4 626 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 CRIPAKQ8N1N5 446 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 C3orf58Q8NDZ4 430 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 SLC7A14Q8TBB6 771 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 CLEC4CQ8WTT0 213 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 IRGQQ8WZA9 623 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 ASB2Q96Q27 587 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 FAM118BQ9BPY3 351 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 CCDC77Q9BR77 488 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 PAAF1Q9BRP4 392 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 ULBP1Q9BZM6 244 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 FOXP3Q9BZS1 431 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 TMEM51Q9NW97 253 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 FAM53CQ9NYF3 392 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 VPS18Q9P253 973 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 FAM50BQ9Y247 325 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 PLAAQ9Y263 795 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 R3HDM2Q9Y2K5 976 aaKnown RBP9.66□□□□□ -0.86
SS18-220ENST00000582092 MRPL42Q9Y6G3 142 aaKnown RBP9.66□□□□□ -0.86
SS18-220ENST00000582092 BRWD1Q9NSI6 2320 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 PLXNA4Q9HCM2 1894 aa9.66□□□□□ -0.86
SS18-220ENST00000582092 CFAP69A5D8W1 941 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 GOLGA6CA6NDK9 693 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 TMEM189-UBE2V1I3L0A0 370 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 APOC4-APOC2K7ER74 178 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 MDM4O15151 490 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 STK10O94804 968 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 DDHD2O94830 711 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 APOC2P02655 101 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 GOLGA6DP0CG33 693 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 NCAM1P13591 858 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 TGM2P21980 687 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 STIP1P31948 543 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 HSD17B3P37058 310 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ALDH7A1P49419 539 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 ITGA8P53708 1063 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ARPP19P56211 112 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 OTUD4Q01804 1114 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 GABPB1Q06547 395 aaPredicted RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 IFRD2Q12894 506 aaPredicted RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 GPS1Q13098 491 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 P3H1Q32P28 736 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 PUS10Q3MIT2 529 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 CTXN3Q4LDR2 81 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 SLC39A12Q504Y0 691 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ANKRD20A8PQ5CZ79 823 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 EFHC2Q5JST6 749 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 CLLU1OSQ5K130 101 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 CEP85LQ5SZL2 805 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 SH3PXD2AQ5TCZ1 1133 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 FAM171A1Q5VUB5 890 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 IZUMO3Q5VZ72 239 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 BTBD8Q5XKL5 378 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ZNF280DQ6N043 979 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 FAM171BQ6P995 826 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 C1orf228Q6PIY5 440 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 EP400NLQ6ZTU2 488 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 SPRED2Q7Z698 418 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 HOOK3Q86VS8 718 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 VSIG1Q86XK7 387 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 PSTKQ8IV42 348 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 ZDHHC14Q8IZN3 488 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ARFGAP1Q8N6T3 406 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 KLHL23Q8NBE8 558 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ACTL9Q8TC94 416 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 MICAL1Q8TDZ2 1067 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 RNF139Q8WU17 664 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ART4Q93070 314 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ZBTB9Q96C00 473 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ZNF558Q96NG5 402 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 ZIM3Q96PE6 472 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 RNF157Q96PX1 679 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 SMOQ99835 787 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 SNRNP25Q9BV90 132 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 OXCT2Q9BYC2 517 aaPredicted RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 FAM204AQ9H8W3 233 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 GPATCH2LQ9NWQ4 482 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 GOLGA6AQ9NYA3 693 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 BCCIPQ9P287 314 aaKnown RBP eCLIP9.65□□□□□ -0.86
SS18-220ENST00000582092 ADAM28Q9UKQ2 775 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 DNPEPQ9ULA0 475 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 TPX2Q9ULW0 747 aaKnown RBP9.65□□□□□ -0.86
SS18-220ENST00000582092 AP4E1Q9UPM8 1137 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 PCDHB5Q9Y5E4 795 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 HEY1Q9Y5J3 304 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 COL6A3P12111 3177 aa9.65□□□□□ -0.86
SS18-220ENST00000582092 SF3B1O75533 1304 aaKnown RBP eCLIP9.64□□□□□ -0.87
SS18-220ENST00000582092 OR6C75A6NL08 312 aa9.64□□□□□ -0.87
SS18-220ENST00000582092 SMAPO00193 183 aa9.64□□□□□ -0.87
SS18-220ENST00000582092 NRP1O14786 923 aa9.64□□□□□ -0.87
SS18-220ENST00000582092 TRIM66O15016 1216 aa9.64□□□□□ -0.87
SS18-220ENST00000582092 RNF40O75150 1001 aa9.64□□□□□ -0.87
SS18-220ENST00000582092 ZNF189O75820 626 aaPredicted RBP9.64□□□□□ -0.87
SS18-220ENST00000582092 BEST1O76090 585 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms