RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ADGRE3Q9BY15 652 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 SAP30LQ9HAJ7 183 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 CHST12Q9NRB3 414 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 VPS45Q9NRW7 570 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 CA14Q9ULX7 337 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 OR2W5A6NFC9 320 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 PRR35P0CG20 571 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 KELP23276 732 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 TECP42680 631 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 ZNF268Q14587 947 aaPredicted RBP7.37□□□□□ -1.23
SS18-214ENST00000580003 TMTC4Q5T4D3 741 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 SLC18B1Q6NT16 456 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 RANBP10Q6VN20 620 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 NEK8Q86SG6 692 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 RASGRP3Q8IV61 690 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 SYTL1Q8IYJ3 562 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 NUDT22Q9BRQ3 303 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 STK33Q9BYT3 514 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 SLC39A10Q9ULF5 831 aa7.37□□□□□ -1.23
SS18-214ENST00000580003 DSCR3O14972 297 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 PLA2G6O60733 806 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 CBFA2T3O75081 653 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 MMP8P22894 467 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 GALNSP34059 522 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 JAK3P52333 1124 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 SEMA3BQ13214 749 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 RAB30Q15771 203 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 PFKFB3Q16875 520 aaPredicted RBP7.36□□□□□ -1.23
SS18-214ENST00000580003 MTX3Q5HYI7 312 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 CNGA4Q8IV77 575 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 OVCA2Q8WZ82 227 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 MUL1Q969V5 352 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 PRR11Q96HE9 360 aaPredicted RBP7.36□□□□□ -1.23
SS18-214ENST00000580003 FAM118BQ9BPY3 351 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 QTRT1Q9BXR0 403 aaKnown RBP7.36□□□□□ -1.23
SS18-214ENST00000580003 PDGFCQ9NRA1 345 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 HELLSQ9NRZ9 838 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 VPS4AQ9UN37 437 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 PCDHB2Q9Y5E7 798 aa7.36□□□□□ -1.23
SS18-214ENST00000580003 PCSK5Q92824 1860 aa7.35□□□□□ -1.23
SS18-214ENST00000580003 CCDC194A0A1B0GVG4 234 aa7.35□□□□□ -1.23
SS18-214ENST00000580003 ATF7P17544 494 aaPredicted RBP7.35□□□□□ -1.23
SS18-214ENST00000580003 STARD3Q14849 445 aa7.35□□□□□ -1.23
SS18-214ENST00000580003 BRD3Q15059 726 aa7.35□□□□□ -1.23
SS18-214ENST00000580003 CLASRPQ8N2M8 674 aaKnown RBP7.35□□□□□ -1.23
SS18-214ENST00000580003 OSR1Q8TAX0 266 aaPredicted RBP7.35□□□□□ -1.23
SS18-214ENST00000580003 PNISRQ8TF01 805 aaKnown RBP7.35□□□□□ -1.23
SS18-214ENST00000580003 KAZALD1Q96I82 304 aa7.35□□□□□ -1.23
SS18-214ENST00000580003 SMIM35A0A1B0GVV1 85 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 SLC3A2P08195 630 aaKnown RBP7.34□□□□□ -1.23
SS18-214ENST00000580003 PPM1AP35813 382 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 IGHMBP2P38935 993 aaKnown RBP7.34□□□□□ -1.23
SS18-214ENST00000580003 WDR5P61964 334 aaKnown RBP7.34□□□□□ -1.23
SS18-214ENST00000580003 RAE1P78406 368 aaKnown RBP7.34□□□□□ -1.23
SS18-214ENST00000580003 SLC14A1Q13336 389 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 FAM90A2PQ658T7 463 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 CCDC144NLQ6NUI1 221 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 XRRA1Q6P2D8 792 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 MORC1Q86VD1 984 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 IPO4Q8TEX9 1081 aaKnown RBP7.34□□□□□ -1.23
SS18-214ENST00000580003 TMEM41AQ96HV5 264 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 SLC29A3Q9BZD2 475 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 TMEM8AQ9HCN3 771 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 RXFP3Q9NSD7 469 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 SCAF8Q9UPN6 1271 aaKnown RBP7.34□□□□□ -1.23
SS18-214ENST00000580003 DTNAQ9Y4J8 743 aa7.34□□□□□ -1.23
SS18-214ENST00000580003 ZNF804BA4D1E1 1349 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 SPATA31A1Q5TZJ5 1347 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 PNMA6EA0A0J9YXQ4 647 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 DNAJC9-AS1A6NH13 148 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 TTC34A8MYJ7 566 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 J3KTA2 159 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 GLP2RO95838 553 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 DUSP1P28562 367 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 ARHGAP25P42331 645 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 UBE4AQ14139 1066 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 CSHL1Q14406 222 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 CNGA3Q16281 694 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 SUPT20HL1Q3ZLR7 823 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 ZNF626Q68DY1 528 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 KRT27Q7Z3Y8 459 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 ZNF398Q8TD17 642 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 PMM1Q92871 262 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 C18orf8Q96DM3 657 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 ABHD10Q9NUJ1 306 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 ARL8BQ9NVJ2 186 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 KLHL13Q9P2N7 655 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 CDC23Q9UJX2 597 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 MAGED2Q9UNF1 606 aaPredicted RBP7.33□□□□□ -1.24
SS18-214ENST00000580003 LRCH1Q9Y2L9 728 aa7.33□□□□□ -1.24
SS18-214ENST00000580003 WDR91A4D1P6 747 aa7.32□□□□□ -1.24
SS18-214ENST00000580003 KCNU1A8MYU2 1149 aa7.32□□□□□ -1.24
SS18-214ENST00000580003 MBPP02686 304 aaPredicted RBP7.32□□□□□ -1.24
SS18-214ENST00000580003 SETSIPP0DME0 302 aa7.32□□□□□ -1.24
SS18-214ENST00000580003 MATN1P21941 496 aa7.32□□□□□ -1.24
SS18-214ENST00000580003 TOGARAM2Q6ZUX3 1019 aa7.32□□□□□ -1.24
SS18-214ENST00000580003 TTLL2Q9BWV7 592 aa7.32□□□□□ -1.24
SS18-214ENST00000580003 NUAK2Q9H093 628 aa7.32□□□□□ -1.24
SS18-214ENST00000580003 CYP2D7A0A087X1C5 515 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 PIP5K1BO14986 540 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms