RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LTFP02788 710 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 TNFRSF4P43489 277 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 ACADSBP45954 432 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 MRPS21P82921 87 aaKnown RBP24.98■■□□□ 1.59
SHMT1-206ENST00000579558 GRAMD4Q6IC98 578 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 DENND1CQ8IV53 801 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 CAMKK1Q8N5S9 505 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 BHMTQ93088 406 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 AGO1Q9UL18 857 aaKnown RBP24.98■■□□□ 1.59
SHMT1-206ENST00000579558 HBS1LQ9Y450 684 aaKnown RBP24.98■■□□□ 1.59
SHMT1-206ENST00000579558 FAM186AA6NE01 2351 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 TBC1D3BA6NDS4 549 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 CNR2P34972 360 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 TIE1P35590 1138 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 CHKAP35790 457 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 RPL34P49207 117 aaKnown RBP24.97■■□□□ 1.59
SHMT1-206ENST00000579558 PTK2Q05397 1052 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 KCNMA1Q12791 1236 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 SRSF5Q13243 272 aaKnown RBP24.97■■□□□ 1.59
SHMT1-206ENST00000579558 TRIP4Q15650 581 aaPredicted RBP24.97■■□□□ 1.59
SHMT1-206ENST00000579558 CDKAL1Q5VV42 579 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 SMYD5Q6GMV2 418 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 NUDT18Q6ZVK8 323 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 CCDC33Q8N5R6 958 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 TERB1Q8NA31 727 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 STK32AQ8WU08 396 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 RUBCNQ92622 972 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 RAB23Q9ULC3 237 aa24.97■■□□□ 1.59
SHMT1-206ENST00000579558 FOXN3O00409 490 aaPredicted RBP24.96■■□□□ 1.59
SHMT1-206ENST00000579558 TRIM24O15164 1050 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 HRO43593 1189 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 HARS2P49590 506 aaKnown RBP24.96■■□□□ 1.59
SHMT1-206ENST00000579558 RAPGEF1Q13905 1077 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 DPY19L2P1Q6NXN4 242 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 MSANTD2Q6P1R3 559 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 PRR23BQ6ZRT6 265 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 SCUBE3Q8IX30 993 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 LSM14BQ9BX40 385 aaKnown RBP24.96■■□□□ 1.59
SHMT1-206ENST00000579558 SLC4A5Q9BY07 1137 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 PLK2Q9NYY3 685 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 NCDNQ9UBB6 729 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 CYTH4Q9UIA0 394 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 MMP17Q9ULZ9 603 aa24.96■■□□□ 1.59
SHMT1-206ENST00000579558 PTPRZ1P23471 2315 aaPredicted RBP24.96■■□□□ 1.59
SHMT1-206ENST00000579558 CCDC163A0A0D9SF12 145 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 SART1O43290 800 aaKnown RBP24.95■■□□□ 1.58
SHMT1-206ENST00000579558 MSI1O43347 362 aaKnown RBP24.95■■□□□ 1.58
SHMT1-206ENST00000579558 KLF8O95600 359 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-206ENST00000579558 APBB3O95704 486 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 TPM2P07951 284 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 PNMA6AP0CW24 399 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-206ENST00000579558 KIR2DL1P43626 348 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-206ENST00000579558 SIM2Q14190 667 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-206ENST00000579558 KRT31Q15323 416 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 LPAL2Q16609 132 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 C10orf76Q5T2E6 689 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 EMC10Q5UCC4 262 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 KLHDC7AQ5VTJ3 777 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 ALLCQ8N6M5 410 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 FAM149B1Q96BN6 582 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 VPS16Q9H269 839 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 FANCLQ9NW38 375 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 FHOD1Q9Y613 1164 aa24.95■■□□□ 1.58
SHMT1-206ENST00000579558 E5RJQ4 531 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 CHRM1P11229 460 aaPredicted RBP24.94■■□□□ 1.58
SHMT1-206ENST00000579558 MYL5Q02045 173 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 HSF5Q4G112 596 aaPredicted RBP24.94■■□□□ 1.58
SHMT1-206ENST00000579558 CEP68Q76N32 757 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 PASD1Q8IV76 773 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 CPXM2Q8N436 756 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 IL17RCQ8NAC3 791 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 TXNDC5Q8NBS9 432 aaKnown RBP24.94■■□□□ 1.58
SHMT1-206ENST00000579558 TSTD1Q8NFU3 115 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 TMEM63CQ9P1W3 806 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 PCDHGC3Q9UN70 934 aa24.94■■□□□ 1.58
SHMT1-206ENST00000579558 AXIN1O15169 862 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 PENKP01210 267 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-206ENST00000579558 CYBBP04839 570 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 NCAM1P13591 858 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 CLCN1P35523 988 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 DGKGP49619 791 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 PDCLQ13371 301 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 DRAP1Q14919 205 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-206ENST00000579558 FYB2Q5VWT5 728 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 TMEM110Q86TL2 294 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 SLC47A2Q86VL8 602 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 FAM71AQ8IYT1 594 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 DCLK2Q8N568 766 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 P2RY11Q96G91 374 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 ZDHHC4Q9NPG8 344 aa24.93■■□□□ 1.58
SHMT1-206ENST00000579558 OTOGLQ3ZCN5 2332 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 PAPSS1O43252 624 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-206ENST00000579558 UCHL3P15374 230 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 KRT9P35527 623 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 BPIFB4P59827 614 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 CRY1Q16526 586 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 EOGTQ5NDL2 527 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 TOGARAM2Q6ZUX3 1019 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 FAM217AQ8IXS0 508 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 ZNF513Q8N8E2 541 aaPredicted RBP24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms