RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 COL19A1Q14993 1142 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 HECTD3Q5T447 861 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 PSTKQ8IV42 348 aaKnown RBP16.81■□□□□ 0.28
SS18-211ENST00000578954 KATNAL2Q8IYT4 538 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 TEKT4Q8WW24 435 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 ALG3Q92685 438 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 SLC39A13Q96H72 371 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 CARD9Q9H257 536 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 CCSER2Q9H7U1 834 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 FAM204AQ9H8W3 233 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 DDIT4Q9NX09 232 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 DNMT3BQ9UBC3 853 aaKnown RBP16.81■□□□□ 0.28
SS18-211ENST00000578954 PRRC2BQ5JSZ5 2229 aaKnown RBP16.8■□□□□ 0.28
SS18-211ENST00000578954 CCDC195A0A1B0GUA6 201 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 SOBPA7XYQ1 873 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 MDM4O15151 490 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 PRPSAP2O60256 369 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 RHOP08100 348 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 GBP1P32455 592 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 ATXN1P54253 815 aaKnown RBP16.8■□□□□ 0.28
SS18-211ENST00000578954 SCAPQ12770 1279 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 ADGRE1Q14246 886 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 BOLA3Q53S33 107 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 PRSS36Q5K4E3 855 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 ZNF697Q5TEC3 545 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 DCAF12L1Q5VU92 463 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 TXNRD3NBQ6F5E7 133 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 RSRC2Q7L4I2 434 aaKnown RBP16.8■□□□□ 0.28
SS18-211ENST00000578954 ADAM32Q8TC27 787 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 OSBPL9Q96SU4 736 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 CORO1BQ9BR76 489 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 RRAGDQ9NQL2 400 aaPredicted RBP16.8■□□□□ 0.28
SS18-211ENST00000578954 DDX56Q9NY93 547 aaKnown RBP16.8■□□□□ 0.28
SS18-211ENST00000578954 SFMBT1Q9UHJ3 866 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 TLR6Q9Y2C9 796 aa16.8■□□□□ 0.28
SS18-211ENST00000578954 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.8■□□□□ 0.28
SS18-211ENST00000578954 MOSPD3O75425 235 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 IGLV3-27P01718 113 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 SRGAP2BP0DMP2 458 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 DDX6P26196 483 aaKnown RBP eCLIP16.79■□□□□ 0.28
SS18-211ENST00000578954 ATP5C1P36542 298 aaKnown RBP16.79■□□□□ 0.28
SS18-211ENST00000578954 CCR2P41597 374 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 RWDD2BP57060 319 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 RING1Q06587 406 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 NME3Q13232 169 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 ADAM15Q13444 863 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 PPP2R5DQ14738 602 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 TRIP4Q15650 581 aaPredicted RBP16.79■□□□□ 0.28
SS18-211ENST00000578954 CTC1Q2NKJ3 1217 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 BRMS1LQ5PSV4 323 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 C10orf120Q5SQS8 335 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 GPR153Q6NV75 609 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 ANKRD54Q6NXT1 300 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 FAM131BQ86XD5 332 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 EXD1Q8NHP7 514 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 SHKBP1Q8TBC3 707 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 FAM71BQ8TC56 605 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 MRPS31Q92665 395 aaKnown RBP16.79■□□□□ 0.28
SS18-211ENST00000578954 GCNAQ96QF7 691 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 HCFC1R1Q9NWW0 138 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 ARHGEF38Q9NXL2 777 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.79■□□□□ 0.28
SS18-211ENST00000578954 MARCH2Q9P0N8 246 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 DNMT3LQ9UJW3 386 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 NUDT5Q9UKK9 219 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 HBS1LQ9Y450 684 aaKnown RBP16.79■□□□□ 0.28
SS18-211ENST00000578954 SAR1BQ9Y6B6 198 aa16.79■□□□□ 0.28
SS18-211ENST00000578954 CLUHO75153 1309 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 C2orf78A6NCI8 922 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 NRG2O14511 850 aaPredicted RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 COCHO43405 550 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 TBX18O95935 607 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 RARAP10276 462 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 MYL4P12829 197 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 HOXB8P17481 243 aaPredicted RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 SSR1P43307 286 aaKnown RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 ARSEP51690 589 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 KPNA1P52294 538 aaPredicted RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 EFEMP1Q12805 493 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 TUBB2AQ13885 445 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 SYCE2Q6PIF2 218 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 PDZD4Q76G19 769 aaPredicted RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 SND1Q7KZF4 910 aaKnown RBP eCLIP16.78■□□□□ 0.28
SS18-211ENST00000578954 VSIG1Q86XK7 387 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 CCDC185Q8N715 623 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 SMG7Q92540 1137 aaKnown RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 ZNF592Q92610 1267 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 LRCH3Q96II8 777 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 PBKQ96KB5 322 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 FCRL2Q96LA5 508 aaPredicted RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 SNRNP25Q9BV90 132 aaKnown RBP16.78■□□□□ 0.28
SS18-211ENST00000578954 TUBB2BQ9BVA1 445 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 PCSK1NQ9UHG2 260 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 ZMYM5Q9UJ78 669 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 RASAL2Q9UJF2 1139 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 FZD10Q9ULW2 581 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 DOCK6Q96HP0 2047 aa16.78■□□□□ 0.28
SS18-211ENST00000578954 A0A1W2PRU2 124 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 KCNU1A8MYU2 1149 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 ZNF487B1APH4 448 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms