RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 MORC3Q14149 939 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 KRT32Q14532 448 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 TMEM132DQ14C87 1099 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 SV2CQ496J9 727 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 KIAA0895LQ68EN5 471 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 FAM171BQ6P995 826 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 ARL14Q8N4G2 192 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 WBP2Q969T9 261 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 MIB2Q96AX9 1013 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 ESYT1Q9BSJ8 1104 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 SGK2Q9HBY8 427 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 SLC27A6Q9Y2P4 619 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 HIVEP1P15822 2718 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 MYH10P35580 1976 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 GP1BAP07359 652 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 CPA1P15085 419 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 PDIA3P30101 505 aaKnown RBP17.2■□□□□ 0.34
VPS53-218ENST00000575207 MATR3P43243 847 aaKnown RBP eCLIP17.2■□□□□ 0.349e-10■■□□□ 13.9
VPS53-218ENST00000575207 OXCT1P55809 520 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 NXPH1P58417 271 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 AGXT2Q9BYV1 514 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 KDM4CQ9H3R0 1056 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 EBF2Q9HAK2 575 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 L1RE1Q9UN81 338 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 C2CD2Q9Y426 696 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 PTPRJQ12913 1337 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 LRRK1Q38SD2 2015 aa17.2■□□□□ 0.34
VPS53-218ENST00000575207 A0A1B0GVM2 712 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 NOBOXO60393 691 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 NEMFO60524 1076 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 GREM1O60565 184 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 HIP1RO75146 1068 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 AGFG2O95081 481 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 CKMT1AP12532 417 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 PRKCHP24723 683 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 GRNP28799 593 aaKnown RBP17.19■□□□□ 0.34
VPS53-218ENST00000575207 DCTP40126 519 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 ZBTB16Q05516 673 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 MAPK7Q13164 816 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 ZNF234Q14588 700 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 E2F5Q15329 346 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 C4orf50Q6ZRC1 276 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 HTR3DQ70Z44 454 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 TMEM86AQ8N2M4 240 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 TMEM161BQ8NDZ6 487 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 UCMAQ8WVF2 138 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 FAM212AQ96EL1 285 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 SLITRK1Q96PX8 696 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 DPP3Q9NY33 737 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 SNX14Q9Y5W7 946 aa17.19■□□□□ 0.34
VPS53-218ENST00000575207 ABCA2Q9BZC7 2435 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 VPS37CA5D8V6 355 aaPredicted RBP17.18■□□□□ 0.34
VPS53-218ENST00000575207 TLR4O00206 839 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 OGTO15294 1046 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 EPHX1P07099 455 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 CDC25AP30304 524 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 EVCP57679 992 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 SRSF6Q13247 344 aaKnown RBP17.18■□□□□ 0.34
VPS53-218ENST00000575207 CAMK2GQ13555 558 aaPredicted RBP17.18■□□□□ 0.34
VPS53-218ENST00000575207 TPGS1Q6ZTW0 290 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 ATCAYQ86WG3 371 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 SRRM1Q8IYB3 904 aaKnown RBP17.18■□□□□ 0.34
VPS53-218ENST00000575207 SSC4DQ8WTU2 575 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 ATXN7L3BQ96GX2 97 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 FUCA2Q9BTY2 467 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 ASB7Q9H672 318 aa17.18■□□□□ 0.34
VPS53-218ENST00000575207 MAGEC2Q9UBF1 373 aaPredicted RBP17.18■□□□□ 0.34
VPS53-218ENST00000575207 CPSF3Q9UKF6 684 aaKnown RBP17.18■□□□□ 0.34
VPS53-218ENST00000575207 GABRDO14764 452 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 WNT9AO14904 365 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 MAPTP10636 758 aaKnown RBP17.17■□□□□ 0.34
VPS53-218ENST00000575207 ANXA13P27216 316 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 PCSK1P29120 753 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 GEN1Q17RS7 908 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 OSTM1Q86WC4 334 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 RBBP8NLQ8NC74 664 aaPredicted RBP17.17■□□□□ 0.34
VPS53-218ENST00000575207 ERMNQ8TAM6 284 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 GZF1Q9H116 711 aaPredicted RBP17.17■□□□□ 0.34
VPS53-218ENST00000575207 AASDHPPTQ9NRN7 309 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 ENTPD2Q9Y5L3 495 aa17.17■□□□□ 0.34
VPS53-218ENST00000575207 PMS2P1A4D2B8 440 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 C10orf142B7Z368 130 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 TNFSF15O95150 251 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 ITGA2BP08514 1039 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 THEGLP0DJG4 465 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 BDNFP23560 247 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 PNPLA4P41247 253 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 MFAP3P55082 362 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 AAMPQ13685 434 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 KIF26BQ2KJY2 2108 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 TDRD10Q5VZ19 366 aaKnown RBP17.16■□□□□ 0.34
VPS53-218ENST00000575207 SLC25A45Q8N413 288 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 OR4C6Q8NH72 309 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 ZNF560Q96MR9 790 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 SLC4A5Q9BY07 1137 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 ABCG4Q9H172 646 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.16■□□□□ 0.342e-6■■■■■ 296.9
VPS53-218ENST00000575207 KCNG1Q9UIX4 513 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 TUBD1Q9UJT1 453 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 ACSL6Q9UKU0 697 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms