RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SH3TC2Q8TF17 1288 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 APBB2Q92870 758 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 BTBD10Q9BSF8 475 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 KATNBL1Q9H079 304 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 DHX35Q9H5Z1 703 aaKnown RBP23.59■■□□□ 1.37
VPS53-211ENST00000571805 FAM159BA6NKW6 160 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 DESP17661 470 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 SNX16P57768 344 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 BMPR2Q13873 1038 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 TTLL12Q14166 644 aaPredicted RBP23.59■■□□□ 1.37
VPS53-211ENST00000571805 SOWAHAQ2M3V2 549 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 ZNF410Q86VK4 478 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 UNC93AQ86WB7 457 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 SNX27Q96L92 541 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 NUDCD1Q96RS6 583 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 C2orf71A6NGG8 1288 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 HCRTO43612 131 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 CYP2C8P10632 490 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 MYL2P10916 166 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 CES4AQ5XG92 561 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 SLC26A9Q7LBE3 791 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 TTC8Q8TAM2 541 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 KCNV2Q8TDN2 545 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 C18orf25Q96B23 403 aaPredicted RBP23.58■■□□□ 1.37
VPS53-211ENST00000571805 MECRQ9BV79 373 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 FAM237BA0A1B0GVD1 139 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.58■■□□□ 1.37
VPS53-211ENST00000571805 NR2C2P49116 596 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 KRT72Q14CN4 511 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 KCNT2Q6UVM3 1135 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 LRRC52Q8N7C0 313 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.58■■□□□ 1.37
VPS53-211ENST00000571805 OR6B3Q8NGW1 331 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 GSDMBQ8TAX9 411 aa23.58■■□□□ 1.37
VPS53-211ENST00000571805 QKIQ96PU8 341 aaKnown RBP eCLIP23.58■■□□□ 1.37
VPS53-211ENST00000571805 KCTD15Q96SI1 283 aaPredicted RBP23.58■■□□□ 1.37
VPS53-211ENST00000571805 A6NJR5 290 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 E7ENQ6 273 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 ENTPD5O75356 428 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 KRT38O76015 456 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 ZFXP17010 805 aaPredicted RBP23.57■■□□□ 1.36
VPS53-211ENST00000571805 GRIA1P42261 906 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 RPL34P49207 117 aaKnown RBP23.57■■□□□ 1.36
VPS53-211ENST00000571805 ZBTB16Q05516 673 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 KIZQ2M2Z5 673 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 C4orf50Q6ZRC1 276 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 ARCQ7LC44 396 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 CCDC33Q8N5R6 958 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 C7orf31Q8N865 590 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 ARMC2Q8NEN0 867 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 MTBPQ96DY7 904 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 OXNAD1Q96HP4 312 aaPredicted RBP23.57■■□□□ 1.36
VPS53-211ENST00000571805 C7orf26Q96N11 449 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 CSPG4P5Q96PW8 444 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 EIF2AQ9BY44 585 aaKnown RBP23.57■■□□□ 1.36
VPS53-211ENST00000571805 SLC13A1Q9BZW2 595 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 SIRPGQ9P1W8 387 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 GJD2Q9UKL4 321 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 AP4E1Q9UPM8 1137 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 MAD1L1Q9Y6D9 718 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 GSC2O15499 205 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 TOMM70O94826 608 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 ADORA2AP29274 412 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 HSF5Q4G112 596 aaPredicted RBP23.57■■□□□ 1.36
VPS53-211ENST00000571805 RFWD3Q6PCD5 774 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 ADAMTS10Q9H324 1103 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 PCDHA11Q9Y5I1 949 aa23.57■■□□□ 1.36
VPS53-211ENST00000571805 A8MXQ7 604 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 GJA5P36382 358 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 BST1Q10588 318 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 SEMA5AQ13591 1074 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 CRYMQ14894 314 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 FAM91A1Q658Y4 838 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 TTC7BQ86TV6 843 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 KIRREL3Q8IZU9 778 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 CCDC185Q8N715 623 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 ANKRD52Q8NB46 1076 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 FBXO41Q8TF61 875 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 ANKRD27Q96NW4 1050 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.56■■□□□ 1.36
VPS53-211ENST00000571805 DTLQ9NZJ0 730 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 HES2Q9Y543 173 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 SCNN1AP37088 669 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 BST2Q10589 180 aaKnown RBP23.56■■□□□ 1.36
VPS53-211ENST00000571805 SLC27A1Q6PCB7 646 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 ALKAL1Q6UXT8 129 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 TRIM42Q8IWZ5 723 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 E2F7Q96AV8 911 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 XAB2Q9HCS7 855 aaKnown RBP23.56■■□□□ 1.36
VPS53-211ENST00000571805 MOCS1Q9NZB8 636 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 LRRC42Q9Y546 428 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 USP3Q9Y6I4 520 aa23.56■■□□□ 1.36
VPS53-211ENST00000571805 FCHO1O14526 889 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 CYB561D2O14569 222 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 CCDC130P13994 396 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 OCRLQ01968 901 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 C9orf57Q5W0N0 161 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 NCBP2-AS2Q69YL0 99 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 BEST2Q8NFU1 509 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 KBTBD7Q8WVZ9 684 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms