RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ZNF606Q8WXB4 792 aa21.23■□□□□ 0.99
CLK3-225ENST00000569063 EDEM1Q92611 657 aa21.23■□□□□ 0.99
CLK3-225ENST00000569063 TUBGCP2Q9BSJ2 902 aa21.23■□□□□ 0.99
CLK3-225ENST00000569063 NDST4Q9H3R1 872 aa21.23■□□□□ 0.99
CLK3-225ENST00000569063 DNAJC17Q9NVM6 304 aaKnown RBP21.23■□□□□ 0.99
CLK3-225ENST00000569063 HBS1LQ9Y450 684 aaKnown RBP21.23■□□□□ 0.99
CLK3-225ENST00000569063 PTPRZ1P23471 2315 aaPredicted RBP21.22■□□□□ 0.99
CLK3-225ENST00000569063 BECN2A8MW95 431 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 RPP40O75818 363 aaKnown RBP21.22■□□□□ 0.99
CLK3-225ENST00000569063 FBXO21O94952 628 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 KLF8O95600 359 aaPredicted RBP21.22■□□□□ 0.99
CLK3-225ENST00000569063 DGKEP52429 567 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 LPAL2Q16609 132 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 MIIPQ5JXC2 388 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 GRAMD4Q6IC98 578 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 CEP68Q76N32 757 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 DENND1CQ8IV53 801 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 CPXM2Q8N436 756 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 TXNDC5Q8NBS9 432 aaKnown RBP21.22■□□□□ 0.99
CLK3-225ENST00000569063 TSTD1Q8NFU3 115 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 SHC3Q92529 594 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 SIX2Q9NPC8 291 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 SFMBT1Q9UHJ3 866 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 FBXO10Q9UK96 956 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 STARD13Q9Y3M8 1113 aa21.22■□□□□ 0.99
CLK3-225ENST00000569063 OTOGLQ3ZCN5 2332 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 GOLGA6L22H0YM25 854 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 PIK3R2O00459 728 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 TRIM24O15164 1050 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 LETM1O95202 739 aaPredicted RBP21.21■□□□□ 0.99
CLK3-225ENST00000569063 PENKP01210 267 aaPredicted RBP21.21■□□□□ 0.99
CLK3-225ENST00000569063 RETP07949 1114 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 CISD3P0C7P0 127 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 PRKCSHP14314 528 aaPredicted RBP21.21■□□□□ 0.99
CLK3-225ENST00000569063 GNA15P30679 374 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 ARHGAP44Q17R89 818 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 EOGTQ5NDL2 527 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 C10orf76Q5T2E6 689 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 MSANTD2Q6P1R3 559 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 DENND1BQ6P3S1 775 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 RASSF3Q86WH2 238 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 FAM217AQ8IXS0 508 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 CLEC4CQ8WTT0 213 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 P2RY11Q96G91 374 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 ACP6Q9NPH0 428 aa21.21■□□□□ 0.99
CLK3-225ENST00000569063 KCNJ18B7U540 433 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 SGK1O00141 431 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 ADAM23O75077 832 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 LTFP02788 710 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 TGM1P22735 817 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 ACADSBP45954 432 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 HARS2P49590 506 aaKnown RBP21.2■□□□□ 0.98
CLK3-225ENST00000569063 DGKGP49619 791 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 KCNJ12Q14500 433 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 HSP90AA4PQ58FG1 418 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 FYB2Q5VWT5 728 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 TMEM92Q6UXU6 159 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 CACNA2D4Q7Z3S7 1137 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 TRMT11Q7Z4G4 463 aaKnown RBP21.2■□□□□ 0.98
CLK3-225ENST00000569063 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.2■□□□□ 0.98
CLK3-225ENST00000569063 FAM160A2Q8N612 972 aaPredicted RBP21.2■□□□□ 0.98
CLK3-225ENST00000569063 ENOX1Q8TC92 643 aaKnown RBP21.2■□□□□ 0.98
CLK3-225ENST00000569063 GOLGA1Q92805 767 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 SLC4A5Q9BY07 1137 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 MIS12Q9H081 205 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 SAMSN1Q9NSI8 373 aaKnown RBP21.2■□□□□ 0.98
CLK3-225ENST00000569063 PLK2Q9NYY3 685 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 HCN2Q9UL51 889 aa21.2■□□□□ 0.98
CLK3-225ENST00000569063 ZNF292O60281 2723 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 SART1O43290 800 aaKnown RBP21.19■□□□□ 0.98
CLK3-225ENST00000569063 THAP12O43422 761 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 LRP3O75074 770 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 HNRNPLP14866 589 aaKnown RBP eCLIP21.19■□□□□ 0.98
CLK3-225ENST00000569063 USP8P40818 1118 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 TCP11X2Q5H9J9 407 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 DPY19L2P1Q6NXN4 242 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 TOGARAM2Q6ZUX3 1019 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 SCUBE3Q8IX30 993 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 ZNF513Q8N8E2 541 aaPredicted RBP21.19■□□□□ 0.98
CLK3-225ENST00000569063 BHMTQ93088 406 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 ZC3H10Q96K80 434 aaKnown RBP21.19■□□□□ 0.98
CLK3-225ENST00000569063 ST7Q9NRC1 585 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 STOML2Q9UJZ1 356 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 DNAJC12Q9UKB3 198 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 AJAP1Q9UKB5 411 aaPredicted RBP21.19■□□□□ 0.98
CLK3-225ENST00000569063 SLC27A6Q9Y2P4 619 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 WDR87Q6ZQQ6 2873 aa21.19■□□□□ 0.98
CLK3-225ENST00000569063 LATS1O95835 1130 aa21.18■□□□□ 0.98
CLK3-225ENST00000569063 EEF1GP26641 437 aaKnown RBP21.18■□□□□ 0.98
CLK3-225ENST00000569063 TMEM110Q86TL2 294 aa21.18■□□□□ 0.98
CLK3-225ENST00000569063 KBTBD6Q86V97 674 aa21.18■□□□□ 0.98
CLK3-225ENST00000569063 MDGA1Q8NFP4 955 aa21.18■□□□□ 0.98
CLK3-225ENST00000569063 LOXL4Q96JB6 756 aa21.18■□□□□ 0.98
CLK3-225ENST00000569063 POLMQ9NP87 494 aaPredicted RBP21.18■□□□□ 0.98
CLK3-225ENST00000569063 CYTH4Q9UIA0 394 aa21.18■□□□□ 0.98
CLK3-225ENST00000569063 NFE2L3Q9Y4A8 694 aa21.18■□□□□ 0.98
CLK3-225ENST00000569063 GPR179Q6PRD1 2367 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 GVINP1Q7Z2Y8 2422 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 PRRT4C9JH25 899 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 MSI1O43347 362 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms