RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 MAN2A1Q16706 1144 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 HLA-BQ31612 363 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 LY6G5CQ5SRR4 150 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 EGFLAMQ63HQ2 1017 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 TMC6Q7Z403 805 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 OSTM1Q86WC4 334 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 SLC9A9Q8IVB4 645 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 C12orf56Q8IXR9 622 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 DCP1BQ8IZD4 617 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 ZCCHC9Q8N567 271 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 ZNF513Q8N8E2 541 aaPredicted RBP12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 RHBDD1Q8TEB9 315 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 IPO4Q8TEX9 1081 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 TUBGCP2Q9BSJ2 902 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 TBC1D7Q9P0N9 293 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 GMIPQ9P107 970 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 CPSF3Q9UKF6 684 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 DSEQ9UL01 958 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 A0A1B0GTW7 788 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 TEX51A0A1B0GUA7 166 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 ADH5P11766 374 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 PAX3P23760 479 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 NR2F2P24468 414 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 HOXD13P35453 343 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 MTIF2P46199 727 aaKnown RBP12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 SLC7A9P82251 487 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 TBX2Q13207 712 aaPredicted RBP12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 HSP90AA4PQ58FG1 418 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 CCDC186Q7Z3E2 898 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 GPR155Q7Z3F1 870 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 FMNL3Q8IVF7 1028 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 NELFCDQ8IXH7 590 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 THEM5Q8N1Q8 247 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 PDCL2Q8N4E4 241 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 NAT16Q8N8M0 369 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 WBP2Q969T9 261 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 MRGPRX1Q96LB2 322 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 ACCSQ96QU6 501 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 CDC6Q99741 560 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 METTL14Q9HCE5 456 aaKnown RBP12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 ABCB6Q9NP58 842 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 SMPD4Q9NXE4 827 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 SUSD2Q9UGT4 822 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 GTF3C4Q9UKN8 822 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 L1RE1Q9UN81 338 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 EXOC7Q9UPT5 735 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 PCDHGB2Q9Y5G2 931 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 RAD54BQ9Y620 910 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 CPQQ9Y646 472 aa12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS9D1-207ENST00000568691 UBR5O95071 2799 aaPredicted RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 A0A0B4J269 797 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 ESPNB1AK53 854 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 E9PAM4 449 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 MAPK13O15264 365 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 OGTO15294 1046 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 FLRT2O43155 660 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 XPOTO43592 962 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 ZNF217O75362 1048 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 TULP3O75386 442 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 NR3C1P04150 777 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 TPM1P09493 284 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 HLA-EP13747 358 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 MSNP26038 577 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 NTSR1P30989 418 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 TAF6P49848 677 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 WNT7BP56706 349 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 RPL10AP62906 217 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 SEMG2Q02383 582 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 TLE3Q04726 772 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 STRN3Q13033 797 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 INTS6LQ5JSJ4 861 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 METTL23Q86XA0 190 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 KIAA1958Q8N8K9 716 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 FAM181AQ8N9Y4 354 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 FAM212AQ96EL1 285 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 FAM84AQ96KN4 292 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 ZFRQ96KR1 1074 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 ERGIC2Q96RQ1 377 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 TSPAN18Q96SJ8 248 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 GABRG3Q99928 467 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 RPF1Q9H9Y2 349 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 TAB2Q9NYJ8 693 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 WSB2Q9NYS7 404 aaPredicted RBP12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 CFAP97Q9P2B7 532 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 STARD13Q9Y3M8 1113 aa12.6□□□□□ -0.39
VPS9D1-207ENST00000568691 A0A1B0GVT2 93 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 TBC1D3BA6NDS4 549 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 ZNF840PA6NDX5 716 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 KPNA7A9QM74 516 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 TISP43B9A030 160 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 WASH3PC4AMC7 463 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 PRRT4C9JH25 899 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 TNFSF14O43557 240 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 PRPF6O94906 941 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 OAS1P00973 400 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 PIGRP01833 764 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms