RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CTSSP25774 331 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 PTPN7P35236 360 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CHKAP35790 457 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CETN2P41208 172 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 LIFRP42702 1097 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 GZMKP49863 264 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 THOP1P52888 689 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 BLVRAP53004 296 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 PER3P56645 1201 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TUBB4BP68371 445 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 MRPS9P82933 396 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 HPCAP84074 193 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CCZ1BP86790 482 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CCZ1P86791 482 aaPredicted RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 AKAP17AQ02040 695 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 MEF2AQ02078 507 aaPredicted RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 RELQ04864 619 aaPredicted RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 RUNX1T1Q06455 604 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 KLHL30Q0D2K2 578 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 E2F2Q14209 437 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 GNA13Q14344 377 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 NONOQ15233 471 aaKnown RBP eCLIP3.44□□□□□ -1.86
VPS35-208ENST00000568612 TOMM20Q15388 145 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SF3B3Q15393 1217 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 INSCQ1MX18 579 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 P3H1Q32P28 736 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 MIIPQ5JXC2 388 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 DEPDC1Q5TB30 811 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SYDE2Q5VT97 1194 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 DAB2IPQ5VWQ8 1189 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CTRB2Q6GPI1 263 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 OTUD7BQ6GQQ9 843 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SIGIRRQ6IA17 410 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 NEK5Q6P3R8 708 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 KLC3Q6P597 504 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TUBA3EQ6PEY2 450 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CORO6Q6QEF8 472 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 DSTYKQ6XUX3 929 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 FAM83AQ86UY5 434 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CAND1Q86VP6 1230 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 DDX42Q86XP3 938 aaKnown RBP eCLIP3.44□□□□□ -1.86
VPS35-208ENST00000568612 TMPRSS6Q8IU80 811 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SPATA2LQ8IUW3 424 aaPredicted RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 SLC41A1Q8IVJ1 513 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CCDC83Q8IWF9 413 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CADM3Q8N126 398 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 Q8N1X5 172 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 LSMEM1Q8N8F7 131 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 STKLD1Q8NE28 680 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 MDGA1Q8NFP4 955 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 ZNF480Q8WV37 535 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SNX33Q8WV41 574 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 WDR60Q8WVS4 1066 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 RIN2Q8WYP3 895 aaPredicted RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 NRBF2Q96F24 287 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 ZNF503Q96F45 646 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 PPP1R13BQ96KQ4 1090 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 EGLN2Q96KS0 407 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SPATA17Q96L03 361 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 JAKMIP1Q96N16 626 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 HAPLN3Q96S86 360 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TTPALQ9BTX7 342 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 HGH1Q9BTY7 390 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TIPINQ9BVW5 301 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 AGXT2Q9BYV1 514 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 FAM129AQ9BZQ8 928 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 NDEL1Q9GZM8 345 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 GBA3Q9H227 469 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SMARCAD1Q9H4L7 1026 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 PFDN4Q9NQP4 134 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SLC2A4RGQ9NR83 387 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SAMSN1Q9NSI8 373 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 PDP2Q9P2J9 529 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CRNNQ9UBG3 495 aaPredicted RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 EIF2B4Q9UI10 523 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 SCAF8Q9UPN6 1271 aaKnown RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 EXOC7Q9UPT5 735 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SORCS3Q9UPU3 1222 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CFL2Q9Y281 166 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 ZBTB1Q9Y2K1 713 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 L3MBTL1Q9Y468 752 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TRIM17Q9Y577 477 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 HEY1Q9Y5J3 304 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 SNX9Q9Y5X1 595 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 UGGT2Q9NYU1 1516 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TTC21BQ7Z4L5 1316 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 RPTORQ8N122 1335 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CROCC2H7BZ55 1655 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 HECW2Q9P2P5 1572 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 AQRO60306 1485 aaKnown RBP eCLIP3.43□□□□□ -1.862e-7■■■■■ 29
VPS35-208ENST00000568612 CCDC141Q6ZP82 1450 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 MBD5Q9P267 1494 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PARD3Q8TEW0 1356 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 KANSL1LA0AUZ9 987 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 KLRG2A4D1S0 409 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 LRRC72A6NJI9 287 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 TMEM114B3SHH9 223 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 MCF2LO15068 1137 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NVLO15381 856 aaKnown RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms