RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 C11orf74Q86VG3 221 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 PASD1Q8IV76 773 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 NUP93Q8N1F7 819 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 USP13Q92995 863 aaPredicted RBP14.62□□□□□ -0.07
CLN3-235ENST00000568497 SPATA17Q96L03 361 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 GCNAQ96QF7 691 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 CCDC86Q9H6F5 360 aaKnown RBP14.62□□□□□ -0.07
CLN3-235ENST00000568497 TASP1Q9H6P5 420 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 CCSER2Q9H7U1 834 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 NMUR1Q9HB89 426 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 PLCB1Q9NQ66 1216 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 EBF1Q9UH73 591 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 MAST4O15021 2626 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 O00370 1275 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 FOXN3O00409 490 aaPredicted RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 TRDMT1O14717 391 aaKnown RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 LETM1O95202 739 aaPredicted RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 CAPNS1P04632 268 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 USP17L7P0C7H9 530 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 CDK11BP21127 795 aaKnown RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 TBXAS1P24557 533 aaPredicted RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 CDC25CP30307 473 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 ZNF165P49910 485 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 ZNF132P52740 706 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 ATXN3P54252 364 aaPredicted RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 RAPGEF1Q13905 1077 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 DMC1Q14565 340 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 IQCB1Q15051 598 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 NAIF1Q69YI7 327 aaPredicted RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 PIGZQ86VD9 579 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 TSTD1Q8NFU3 115 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 MRPS31Q92665 395 aaKnown RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 ACDQ96AP0 544 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 DUSP16Q9BY84 665 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 FAM207AQ9NSI2 230 aaPredicted RBP14.61□□□□□ -0.07
CLN3-235ENST00000568497 TJP2Q9UDY2 1190 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 ATP8B3O60423 1300 aa14.61□□□□□ -0.07
CLN3-235ENST00000568497 A0A1W2PQH9 124 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 ZNF840PA6NDX5 716 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 M0QYV0 167 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 IRF1P10914 325 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 LCP1P13796 627 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 ARSAP15289 507 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 EEF1GP26641 437 aaKnown RBP14.6□□□□□ -0.07
CLN3-235ENST00000568497 SYCP1Q15431 976 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 SGO2Q562F6 1265 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 ARHGAP17Q68EM7 881 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 ARMCX6Q7L4S7 300 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 SYT13Q7L8C5 426 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 SCD5Q86SK9 330 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 MON1AQ86VX9 555 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 CMTM8Q8IZV2 173 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 HDDC3Q8N4P3 179 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 CLEC4CQ8WTT0 213 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 MYRFLQ96LU7 910 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 NAP1L5Q96NT1 182 aaPredicted RBP14.6□□□□□ -0.07
CLN3-235ENST00000568497 TTLL2Q9BWV7 592 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 EBF3Q9H4W6 596 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 CSNK1G1Q9HCP0 422 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 NLRC4Q9NPP4 1024 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 GKN1Q9NS71 199 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 APEX2Q9UBZ4 518 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 LIMA1Q9UHB6 759 aaKnown RBP14.6□□□□□ -0.07
CLN3-235ENST00000568497 CYTH4Q9UIA0 394 aa14.6□□□□□ -0.07
CLN3-235ENST00000568497 THAP12O43422 761 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 FGF19O95750 216 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 CKMP06732 381 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 VDRP11473 427 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 ENGP17813 658 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 DRD1P21728 446 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 BCKDHBP21953 392 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 AMPD2Q01433 879 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 C19orf57Q0VDD7 668 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 RUNX3Q13761 415 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 DRAP1Q14919 205 aaPredicted RBP14.59□□□□□ -0.07
CLN3-235ENST00000568497 ZNF423Q2M1K9 1284 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 FBXO43Q4G163 708 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 KLHDC7AQ5VTJ3 777 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 TAF3Q5VWG9 929 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 SLC47A2Q86VL8 602 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 RNF214Q8ND24 703 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 TRMT2BQ96GJ1 504 aaKnown RBP14.59□□□□□ -0.07
CLN3-235ENST00000568497 PCMTD1Q96MG8 357 aaPredicted RBP14.59□□□□□ -0.07
CLN3-235ENST00000568497 GTPBP2Q9BX10 602 aaKnown RBP14.59□□□□□ -0.07
CLN3-235ENST00000568497 ULBP1Q9BZM6 244 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 GANQ9H2C0 597 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 TRPM5Q9NZQ8 1165 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 EVLQ9UI08 416 aaPredicted RBP14.59□□□□□ -0.07
CLN3-235ENST00000568497 RAXQ9Y2V3 346 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 WNT6Q9Y6F9 365 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 ACACAQ13085 2346 aa14.59□□□□□ -0.07
CLN3-235ENST00000568497 MYOFQ9NZM1 2061 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 ANTXRLA6NF34 631 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 OTOL1A6NHN0 477 aaPredicted RBP14.58□□□□□ -0.08
CLN3-235ENST00000568497 COCHO43405 550 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 PRB1P04280 392 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 CFIP05156 583 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 HDCP19113 662 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 POLR2FP61218 127 aaKnown RBP14.58□□□□□ -0.08
CLN3-235ENST00000568497 YWHAEP62258 255 aaKnown RBP14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms