RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RFPL3O75679 317 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 LDOC1O95751 146 aaPredicted RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 IGLV3-19P01714 112 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 EPHX1P07099 455 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 ACO1P21399 889 aaKnown RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 ACSL1P33121 698 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 ATP5C1P36542 298 aaKnown RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 GRIA4P48058 902 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 COPAP53621 1224 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 ORC1Q13415 861 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 WDR72Q3MJ13 1102 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 KCNT1Q5JUK3 1230 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 PRAMEF14Q5SWL7 426 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 USP49Q70CQ1 688 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 TRAPPC11Q7Z392 1133 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 CNDP2Q96KP4 475 aaKnown RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 ZSCAN31Q96LW9 406 aaPredicted RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 PCED1AQ9H1Q7 454 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 DMAP1Q9NPF5 467 aaPredicted RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 TLR8Q9NR97 1041 aaKnown RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 NXF1Q9UBU9 619 aaKnown RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.08■□□□□ 0.32
CLK3-223ENST00000568488 PCDHGA1Q9Y5H4 931 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 TMEM131Q92545 1883 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 MYO18BQ8IUG5 2567 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 ERVH48-1M5A8F1 160 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 FSBPO95073 299 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 GAP43P17677 238 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 CASP5P51878 434 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 MFAP3P55082 362 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 TLE3Q04726 772 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 GRIN1Q05586 938 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 ZNF234Q14588 700 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 RTP5Q14D33 572 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 HES3Q5TGS1 186 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 FAM35AQ86V20 835 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 CBWD2Q8IUF1 395 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 FAM181AQ8N9Y4 354 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 SNIP1Q8TAD8 396 aaKnown RBP17.07■□□□□ 0.32
CLK3-223ENST00000568488 TMEM176AQ96HP8 235 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 NRSN2Q9GZP1 204 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 COMMD8Q9NX08 183 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 IL37Q9NZH6 218 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 FBXO10Q9UK96 956 aa17.07■□□□□ 0.32
CLK3-223ENST00000568488 MDM4O15151 490 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 BRINP1O60477 761 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 AP1G2O75843 785 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 FAM163BP0C2L3 166 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 CDK4P11802 303 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 IDEP14735 1019 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 PRKCHP24723 683 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 CTSKP43235 329 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 C21orf59P57076 290 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 ARID5AQ03989 594 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 ENPP2Q13822 863 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 WDR49Q8IV35 697 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 SPACA3Q8IXA5 215 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 BIRC7Q96CA5 298 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 CIPCQ9C0C6 399 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 LHX5Q9H2C1 402 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 OSGEPQ9NPF4 335 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 NUDT5Q9UKK9 219 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 SLC27A6Q9Y2P4 619 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 HECTD1Q9ULT8 2610 aa17.06■□□□□ 0.32
CLK3-223ENST00000568488 MGAQ8IWI9 3026 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.05■□□□□ 0.32
CLK3-223ENST00000568488 FAM92AA1XBS5 289 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 DFNA5O60443 496 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 CLSTN1O94985 981 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 ITGAVP06756 1048 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 C1SP09871 688 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 DLATP10515 647 aaKnown RBP17.05■□□□□ 0.32
CLK3-223ENST00000568488 TNNI1P19237 187 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 CD27P26842 260 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 ACTN2P35609 894 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 LONP1P36776 959 aaKnown RBP17.05■□□□□ 0.32
CLK3-223ENST00000568488 KCNH2Q12809 1159 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 SERPINA13PQ6UXR4 307 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 PAQR9Q6ZVX9 377 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 RDH13Q8NBN7 331 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 OR2T3Q8NH03 318 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 SORCS1Q8WY21 1168 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 P2RY11Q96G91 374 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 SMARCD1Q96GM5 515 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 NAF1Q96HR8 494 aaKnown RBP17.05■□□□□ 0.32
CLK3-223ENST00000568488 LGMNQ99538 433 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 ELOVL2Q9NXB9 296 aa17.05■□□□□ 0.32
CLK3-223ENST00000568488 A0A1B0GTQ1 180 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 H3BQV1 296 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 SEMA4FO95754 770 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 ABCB4P21439 1286 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 PLA2G4AP47712 749 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 TRPC3Q13507 836 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 E2F5Q15329 346 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 ANKS1BQ7Z6G8 1248 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 FMNL3Q8IVF7 1028 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 EID2Q8N6I1 236 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 FGFBP2Q9BYJ0 223 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 BTBD1Q9H0C5 482 aa17.04■□□□□ 0.32
CLK3-223ENST00000568488 FBXO44Q9H4M3 255 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms