RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GOLGA6L4A6NEF3 574 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 PMLP29590 882 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 CHKAP35790 457 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 SLC8A3P57103 927 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 EFEMP1Q12805 493 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 TRIM61Q5EBN2 209 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 KIAA1211LQ6NV74 962 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 ARMCX6Q7L4S7 300 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 ARHGAP18Q8N392 663 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 IPO4Q8TEX9 1081 aaKnown RBP16.87■□□□□ 0.29
CLN3-229ENST00000567963 ERCC4Q92889 916 aaPredicted RBP16.87■□□□□ 0.29
CLN3-229ENST00000567963 TMEM9BQ9NQ34 198 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 CALCOCO1Q9P1Z2 691 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 RASAL2Q9UJF2 1139 aa16.87■□□□□ 0.29
CLN3-229ENST00000567963 AP5Z1O43299 807 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 SMC2O95347 1197 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 PENKP01210 267 aaPredicted RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 HMBSP08397 361 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 TKTL1P51854 596 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 YWHAGP61981 247 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLN3-229ENST00000567963 FYB2Q5VWT5 728 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 LYSMD4Q5XG99 296 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 PM20D1Q6GTS8 502 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 PSAPL1Q6NUJ1 521 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 NUSAP1Q9BXS6 441 aaKnown RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 DCLK3Q9C098 648 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 MARCH2Q9P0N8 246 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 PILRBQ9UKJ0 227 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 ANGPTL2Q9UKU9 493 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 AGO1Q9UL18 857 aaKnown RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 SLC27A6Q9Y2P4 619 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 GON4LQ3T8J9 2241 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 TRIM49BA6NDI0 452 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 WASH3PC4AMC7 463 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 GFRA2O00451 464 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 ZBTB24O43167 697 aaPredicted RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 ZNF217O75362 1048 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 ZBED1O96006 694 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 NDUFV2P19404 249 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 ITPKAP23677 461 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 CORO1AP31146 461 aaKnown RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 DPP6P42658 865 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 RPL6Q02878 288 aaKnown RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 LRRC63Q05C16 580 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 LMAN2Q12907 356 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 CUL2Q13617 745 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 PEAR1Q5VY43 1037 aaPredicted RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 SLC23A3Q6PIS1 610 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 SLC36A4Q6YBV0 504 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 RSRC2Q7L4I2 434 aaKnown RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 SMARCE1Q969G3 411 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 SLC35C1Q96A29 364 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 CACNA2D2Q9NY47 1150 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 ARMCX3Q9UH62 379 aaPredicted RBP16.86■□□□□ 0.29
CLN3-229ENST00000567963 TSPAN16Q9UKR8 245 aa16.86■□□□□ 0.29
CLN3-229ENST00000567963 PI4KAP42356 2102 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 IGHV1OR15-9A0A0B4J2B8 117 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 TULP2O00295 520 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 XPO1O14980 1071 aaKnown RBP16.85■□□□□ 0.29
CLN3-229ENST00000567963 NOVA1P51513 510 aaKnown RBP16.85■□□□□ 0.29
CLN3-229ENST00000567963 BCAT1P54687 386 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 SHC2P98077 582 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 PDE4CQ08493 712 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 GOLGA7BQ2TAP0 167 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 SGO2Q562F6 1265 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 DENND1CQ8IV53 801 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 DEFB119Q8N690 84 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 ERLEC1Q96DZ1 483 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 TIGD1Q96MW7 591 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 GTPBP4Q9BZE4 634 aaKnown RBP16.85■□□□□ 0.29
CLN3-229ENST00000567963 STRIP2Q9ULQ0 834 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 RAD54BQ9Y620 910 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 EPG5Q9HCE0 2579 aa16.85■□□□□ 0.29
CLN3-229ENST00000567963 SLC12A8A0AV02 714 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 GIPC1O14908 333 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 HOXD12P35452 270 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 MFAP3P55082 362 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 YWHAEP62258 255 aaKnown RBP16.84■□□□□ 0.29
CLN3-229ENST00000567963 ZNF33AQ06730 810 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 BST2Q10589 180 aaKnown RBP16.84■□□□□ 0.29
CLN3-229ENST00000567963 SH3PXD2AQ5TCZ1 1133 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 BHLHA9Q7RTU4 235 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 CPXM2Q8N436 756 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 NDRG1Q92597 394 aaKnown RBP16.84■□□□□ 0.29
CLN3-229ENST00000567963 MRGPRX1Q96LB2 322 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 ULBP1Q9BZM6 244 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 HESX1Q9UBX0 185 aa16.84■□□□□ 0.29
CLN3-229ENST00000567963 HOOK1Q9UJC3 728 aaKnown RBP16.84■□□□□ 0.29
CLN3-229ENST00000567963 KMT2BQ9UMN6 2715 aaPredicted RBP16.84■□□□□ 0.29
CLN3-229ENST00000567963 ATXN2Q99700 1313 aaKnown RBP16.84■□□□□ 0.29
CLN3-229ENST00000567963 VDRP11473 427 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 CEACAM1P13688 526 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 ENGP17813 658 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 TBXAS1P24557 533 aaPredicted RBP16.83■□□□□ 0.28
CLN3-229ENST00000567963 NUCB2P80303 420 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 LRMPQ12912 555 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 GEN1Q17RS7 908 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 UAP1L1Q3KQV9 507 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 UBR7Q8N806 425 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 CEP76Q8TAP6 659 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms