RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TPD52L1Q16890 204 aaPredicted RBP21.71■■□□□ 1.07
CLN3-219ENST00000565778 PLK5Q496M5 336 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 PKDCCQ504Y2 493 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 PMF1Q6P1K2 205 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 TRMT11Q7Z4G4 463 aaKnown RBP21.71■■□□□ 1.07
CLN3-219ENST00000565778 RASSF3Q86WH2 238 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 DENND1CQ8IV53 801 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 PGBD3Q8N328 593 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 MLKLQ8NB16 471 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 SLC35F5Q8WV83 523 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 EDEM1Q92611 657 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 CNOT6LQ96LI5 555 aaKnown RBP21.71■■□□□ 1.07
CLN3-219ENST00000565778 ZSWIM1Q9BR11 485 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 DUSP15Q9H1R2 295 aaPredicted RBP21.71■■□□□ 1.07
CLN3-219ENST00000565778 CNGB3Q9NQW8 809 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 CDV3Q9UKY7 258 aaKnown RBP21.71■■□□□ 1.07
CLN3-219ENST00000565778 AGO1Q9UL18 857 aaKnown RBP21.71■■□□□ 1.07
CLN3-219ENST00000565778 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.71■■□□□ 1.07
CLN3-219ENST00000565778 SPTBN4Q9H254 2564 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 YJEFN3A6XGL0 299 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 E7ENQ6 273 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 PIK3R2O00459 728 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 HNRNPLP14866 589 aaKnown RBP eCLIP21.7■■□□□ 1.06
CLN3-219ENST00000565778 CCDC6Q16204 474 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 SDE2Q6IQ49 451 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 PRR23CQ6ZRP0 262 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 BHLHA9Q7RTU4 235 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 MDGA1Q8NFP4 955 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 KREMEN1Q96MU8 473 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 CRACR2AQ9BSW2 395 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 ABCC13Q9NSE7 274 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 BCCIPQ9P287 314 aaKnown RBP eCLIP21.7■■□□□ 1.06
CLN3-219ENST00000565778 SFMBT1Q9UHJ3 866 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 STARD13Q9Y3M8 1113 aa21.7■■□□□ 1.06
CLN3-219ENST00000565778 ADAM23O75077 832 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 EPN2O95208 641 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 CISD3P0C7P0 127 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 CHRM1P11229 460 aaPredicted RBP21.69■■□□□ 1.06
CLN3-219ENST00000565778 WASP42768 502 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 TOGARAM2Q6ZUX3 1019 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 FMNL3Q8IVF7 1028 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 MED15Q96RN5 788 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 CLSTN2Q9H4D0 955 aa21.69■■□□□ 1.06
CLN3-219ENST00000565778 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.68■■□□□ 1.06
CLN3-219ENST00000565778 FOXD2O60548 495 aaPredicted RBP21.68■■□□□ 1.06
CLN3-219ENST00000565778 GABBR2O75899 941 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 CYBBP04839 570 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 NTSR1P30989 418 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 HARS2P49590 506 aaKnown RBP21.68■■□□□ 1.06
CLN3-219ENST00000565778 ATXN1P54253 815 aaKnown RBP21.68■■□□□ 1.06
CLN3-219ENST00000565778 MFAP3P55082 362 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 DAOAP59103 153 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 SCML4Q8N228 414 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 HMGB4Q8WW32 186 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 PLD4Q96BZ4 506 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 HSFY1Q96LI6 401 aa21.68■■□□□ 1.06
CLN3-219ENST00000565778 TCRBV21S2A2A0A5A6 115 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 PRRT4C9JH25 899 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 ZBTB24O43167 697 aaPredicted RBP21.67■■□□□ 1.06
CLN3-219ENST00000565778 SLC9A1P19634 815 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 MTIF2P46199 727 aaKnown RBP21.67■■□□□ 1.06
CLN3-219ENST00000565778 ZNF132P52740 706 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 TRIP4Q15650 581 aaPredicted RBP21.67■■□□□ 1.06
CLN3-219ENST00000565778 FYB2Q5VWT5 728 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 EGFLAMQ63HQ2 1017 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 GBP6Q6ZN66 633 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 ENOSF1Q7L5Y1 443 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 C11orf74Q86VG3 221 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 CHPFQ8IZ52 775 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 C12orf50Q8NA57 414 aaPredicted RBP21.67■■□□□ 1.06
CLN3-219ENST00000565778 DDI1Q8WTU0 396 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 RLN3Q8WXF3 142 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 IRGQQ8WZA9 623 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 GOLGA1Q92805 767 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 MIS12Q9H081 205 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 FBXO10Q9UK96 956 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 HCN2Q9UL51 889 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 CNTN6Q9UQ52 1028 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 HBS1LQ9Y450 684 aaKnown RBP21.67■■□□□ 1.06
CLN3-219ENST00000565778 PCDHGA5Q9Y5G8 931 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 DMXL1Q9Y485 3027 aa21.67■■□□□ 1.06
CLN3-219ENST00000565778 MAP3K13O43283 966 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 LETM1O95202 739 aaPredicted RBP21.66■■□□□ 1.06
CLN3-219ENST00000565778 PENKP01210 267 aaPredicted RBP21.66■■□□□ 1.06
CLN3-219ENST00000565778 ZNF806P0C7X5 589 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 HOXB2P14652 356 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 CREB5Q02930 508 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 SF3A2Q15428 464 aaKnown RBP21.66■■□□□ 1.06
CLN3-219ENST00000565778 AASDHQ4L235 1098 aaPredicted RBP21.66■■□□□ 1.06
CLN3-219ENST00000565778 IRF2BP1Q8IU81 584 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 CPXM2Q8N436 756 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 FAM81BQ96LP2 452 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 ACOX2Q99424 681 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 ST7Q9NRC1 585 aa21.66■■□□□ 1.06
CLN3-219ENST00000565778 MED7O43513 233 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 GDF9O60383 454 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 FBXO21O94952 628 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 LTFP02788 710 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 MPLP40238 635 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 USP8P40818 1118 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms