RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 DAOAP59103 153 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 ADIGQ0VDE8 80 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 BSPRYQ5W0U4 402 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 ANO7Q6IWH7 933 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 RBBP8NLQ8NC74 664 aaPredicted RBP15.58■□□□□ 0.08
CLN3-213ENST00000565047 TPSD1Q9BZJ3 242 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 INTS2Q9H0H0 1204 aaKnown RBP15.58■□□□□ 0.08
CLN3-213ENST00000565047 ARRDC1-AS1Q9H2J1 176 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 LRRC4Q9HBW1 653 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 CNGB3Q9NQW8 809 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 DNAJC17Q9NVM6 304 aaKnown RBP15.58■□□□□ 0.08
CLN3-213ENST00000565047 HESX1Q9UBX0 185 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 RASAL2Q9UJF2 1139 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 STOML2Q9UJZ1 356 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 ZNF510Q9Y2H8 683 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 PCDHGA5Q9Y5G8 931 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.58■□□□□ 0.08
CLN3-213ENST00000565047 LAMA1P25391 3075 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 GDF9O60383 454 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 ZNF806P0C7X5 589 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 BCKDHBP21953 392 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 BRD2P25440 801 aaKnown RBP15.57■□□□□ 0.08
CLN3-213ENST00000565047 P2RY2P41231 377 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 CETN1Q12798 172 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 PREPLQ4J6C6 727 aaPredicted RBP15.57■□□□□ 0.08
CLN3-213ENST00000565047 EOGTQ5NDL2 527 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 C10orf76Q5T2E6 689 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 EGFLAMQ63HQ2 1017 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 CPXM2Q8N436 756 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 ZNF513Q8N8E2 541 aaPredicted RBP15.57■□□□□ 0.08
CLN3-213ENST00000565047 ACOX2Q99424 681 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 DCLK3Q9C098 648 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 RXFP3Q9NSD7 469 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 PLK2Q9NYY3 685 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 CLEC4EQ9ULY5 219 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 SLC27A6Q9Y2P4 619 aa15.57■□□□□ 0.08
CLN3-213ENST00000565047 SLC12A8A0AV02 714 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 IGLV3-27P01718 113 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 FYNP06241 537 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 SDHBP21912 280 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 CHKAP35790 457 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 GPD2P43304 727 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 SF3A2Q15428 464 aaKnown RBP15.56■□□□□ 0.08
CLN3-213ENST00000565047 STILQ15468 1287 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 MAP7D1Q3KQU3 841 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 PMS2CLQ68D20 193 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 GRAMD4Q6IC98 578 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 DPY19L2P1Q6NXN4 242 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 MSANTD2Q6P1R3 559 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 FRMD1Q8N878 549 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 IRGQQ8WZA9 623 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 PLD4Q96BZ4 506 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 PIWIL1Q96J94 861 aaKnown RBP15.56■□□□□ 0.08
CLN3-213ENST00000565047 HSFY1Q96LI6 401 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 XPO6Q96QU8 1125 aaKnown RBP15.56■□□□□ 0.08
CLN3-213ENST00000565047 GABRG3Q99928 467 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 CLSTN2Q9H4D0 955 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 ABCC13Q9NSE7 274 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 OLA1Q9NTK5 396 aaKnown RBP15.56■□□□□ 0.08
CLN3-213ENST00000565047 SFMBT1Q9UHJ3 866 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 MBD1Q9UIS9 605 aaPredicted RBP15.56■□□□□ 0.08
CLN3-213ENST00000565047 INVSQ9Y283 1065 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 MYO18AQ92614 2054 aaKnown RBP15.56■□□□□ 0.08
CLN3-213ENST00000565047 SPAG17Q6Q759 2223 aa15.56■□□□□ 0.08
CLN3-213ENST00000565047 SDK1Q7Z5N4 2213 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 MED19A0JLT2 244 aaPredicted RBP15.55■□□□□ 0.08
CLN3-213ENST00000565047 BCLAF3A2AJT9 711 aaKnown RBP15.55■□□□□ 0.08
CLN3-213ENST00000565047 BECN2A8MW95 431 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 TM4SF5O14894 197 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 HMBSP08397 361 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 SLC9A1P19634 815 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 NTSR1P30989 418 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 DGKGP49619 791 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 RGS7P49802 495 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 MFAP3P55082 362 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 ENPP2Q13822 863 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 CCDC6Q16204 474 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 USP39Q53GS9 565 aaKnown RBP15.55■□□□□ 0.08
CLN3-213ENST00000565047 RNF43Q68DV7 783 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 GJB7Q6PEY0 223 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 TRIM65Q6PJ69 517 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 DGLUCYQ7Z3D6 616 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 DENND1CQ8IV53 801 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 FMNL3Q8IVF7 1028 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 MLKLQ8NB16 471 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 NETO1Q8TDF5 533 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 CLEC4CQ8WTT0 213 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 EDEM1Q92611 657 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 CYTH4Q9UIA0 394 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 STRIP2Q9ULQ0 834 aa15.55■□□□□ 0.08
CLN3-213ENST00000565047 HBS1LQ9Y450 684 aaKnown RBP15.55■□□□□ 0.08
CLN3-213ENST00000565047 M0QYV0 167 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 SLC30A4O14863 429 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 FOXD2O60548 495 aaPredicted RBP15.54■□□□□ 0.08
CLN3-213ENST00000565047 RHOBTB1O94844 696 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 FGFR1OPO95684 399 aaKnown RBP15.54■□□□□ 0.08
CLN3-213ENST00000565047 LCP1P13796 627 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 GABRG2P18507 467 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 MPLP40238 635 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 APBA1Q02410 837 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms