RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 FAM183BPQ6ZVS7 135 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 LIMS2Q7Z4I7 341 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 CPLX4Q7Z7G2 160 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 PPIL6Q8IXY8 311 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 ANKRD52Q8NB46 1076 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 UHMK1Q8TAS1 419 aaKnown RBP7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 DNAJB3Q8WWF6 145 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 ATXN2LQ8WWM7 1075 aaKnown RBP7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 HSFY1Q96LI6 401 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 ZNF317Q96PQ6 595 aaPredicted RBP7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 TMEM121Q9BTD3 319 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 ZBED2Q9BTP6 218 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 EIF2AQ9BY44 585 aaKnown RBP7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 UBN1Q9NPG3 1134 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 SCHIP1Q9P0W5 487 aaPredicted RBP7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 PCSK1NQ9UHG2 260 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 CPA4Q9UI42 421 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 GINS2Q9Y248 185 aa7.56□□□□□ -1.2
HERPUD1-209ENST00000564678 SMIM28A0A1B0GU29 152 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SMIM23A6NLE4 172 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 A8MXQ7 604 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 KPNA7A9QM74 516 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 MDM4O15151 490 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 TOMM70O94826 608 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 IFNB1P01574 187 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 PECAM1P16284 738 aaPredicted RBP7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 TSHRP16473 764 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SDC4P31431 198 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 RGS2P41220 211 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SLC18A1P54219 525 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 BCAT1P54687 386 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 CDH6P55285 790 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 PIN1Q13526 163 aaPredicted RBP7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 MLC1Q15049 377 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SOWAHAQ2M3V2 549 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 GOLGA7BQ2TAP0 167 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 CCDC14Q49A88 953 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 PRAMEF19Q5SWL8 479 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 UBAP2Q5T6F2 1119 aaKnown RBP7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 GKAP1Q5VSY0 366 aaPredicted RBP7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 PMF1Q6P1K2 205 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 TAF2Q6P1X5 1199 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 OLFML1Q6UWY5 402 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 C17orf99Q6UX52 265 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 TADA2BQ86TJ2 420 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 ACOT1Q86TX2 421 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 TTC30AQ86WT1 665 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 RFX6Q8HWS3 928 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SCUBE3Q8IX30 993 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 AFAP1L2Q8N4X5 818 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 C12orf29Q8N999 325 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 GLIS1Q8NBF1 620 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 VPS37AQ8NEZ2 397 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 OR6B3Q8NGW1 331 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 MDM1Q8TC05 714 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SOCS4Q8WXH5 440 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 P3H4Q92791 437 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 PLD4Q96BZ4 506 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 RNF157Q96PX1 679 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SELENOSQ9BQE4 189 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 MRPL45Q9BRJ2 306 aaKnown RBP7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SAYSD1Q9NPB0 183 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 EURLQ9NYK6 297 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 ACTR10Q9NZ32 417 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 SENP1Q9P0U3 644 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 NAALADL1Q9UQQ1 740 aa7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 PDCD11Q14690 1871 aaKnown RBP7.55□□□□□ -1.2
HERPUD1-209ENST00000564678 C17orf102A2RUQ5 167 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 ITGBL1O95965 494 aaPredicted RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 INHAP05111 366 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 RPLP2P05387 115 aaKnown RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 ZSCAN5DPP0CG00 497 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 RBP3P10745 1247 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 DRD4P21917 467 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 TGM2P21980 687 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 GNL1P36915 607 aaPredicted RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 PTPN9P43378 593 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 CTCFP49711 727 aaPredicted RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 TAF6P49848 677 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 ARL4CP56559 192 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 HUNKP57058 714 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 EIF3EP60228 445 aaKnown RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 TMEM62Q0P6H9 643 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 BST2Q10589 180 aaKnown RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 NOMO1Q15155 1222 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 CCDC85BQ15834 202 aaPredicted RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 SV2CQ496J9 727 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 CST9Q5W186 159 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 C4orf22Q6V702 233 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 CYP4V2Q6ZWL3 525 aaPredicted RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 SLC26A9Q7LBE3 791 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 TMEM130Q8N3G9 435 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 NAT8LQ8N9F0 302 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 HSPH1Q92598 858 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 PRCCQ92733 491 aaPredicted RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 NINJ1Q92982 152 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 ACSF2Q96CM8 615 aaPredicted RBP7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 TNIP3Q96KP6 325 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 RHOVQ96L33 236 aa7.54□□□□□ -1.2
HERPUD1-209ENST00000564678 C9orf72Q96LT7 481 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms