RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 H3BQV1 296 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 NPC1O15118 1278 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 PCDHGA12O60330 932 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 AP1G2O75843 785 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 TBX18O95935 607 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 EPHX1P07099 455 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 FAM163BP0C2L3 166 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 ZDHHC11BP0C7U3 371 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 DLATP10515 647 aaKnown RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 TNNI1P19237 187 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 ATP5C1P36542 298 aaKnown RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 LONP1P36776 959 aaKnown RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 GRIA4P48058 902 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 ZNF132P52740 706 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 CXADRP78310 365 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 ARID5AQ03989 594 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 GRIN1Q05586 938 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 CCDC173Q0VFZ6 552 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 ORC1Q13415 861 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 E2F5Q15329 346 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 LAYNQ6UX15 382 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 TRAPPC11Q7Z392 1133 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 FAM35AQ86V20 835 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 CBWD2Q8IUF1 395 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 KLF16Q9BXK1 252 aaPredicted RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 PCED1AQ9H1Q7 454 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 C6orf106Q9H6K1 298 aaPredicted RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 TM9SF3Q9HD45 589 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 DMAP1Q9NPF5 467 aaPredicted RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 TLR8Q9NR97 1041 aaKnown RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 NXF1Q9UBU9 619 aaKnown RBP7.73□□□□□ -1.17
VPS4A-203ENST00000564399 SLCO1B1Q9Y6L6 691 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 AHCTF1Q8WYP5 2266 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 DOPEY2Q9Y3R5 2298 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 PIEZO2Q9H5I5 2752 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 TDRD6O60522 2096 aaKnown RBP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 ENC1O14682 589 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 KIAA0391O15091 583 aaKnown RBP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 GREM1O60565 184 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 RFPL3O75679 317 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 FSBPO95073 299 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 LDOC1O95751 146 aaPredicted RBP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 CST3P01034 146 aaPredicted RBP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 IGLV3-19P01714 112 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 CDK4P11802 303 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 ACO1P21399 889 aaKnown RBP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 ACSL1P33121 698 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 CASP5P51878 434 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 C21orf59P57076 290 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 TARDBPQ13148 414 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 TRPC3Q13507 836 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 ALCAMQ13740 583 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 ZNF234Q14588 700 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 GEN1Q17RS7 908 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 PRAMEF14Q5SWL7 426 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 SERPINA13PQ6UXR4 307 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 SV2BQ7L1I2 683 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 GATAD2AQ86YP4 633 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 WDR49Q8IV35 697 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 RDH13Q8NBN7 331 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 FGF11Q92914 225 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 SMARCD1Q96GM5 515 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 CNDP2Q96KP4 475 aaKnown RBP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 CIPCQ9C0C6 399 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 NRSN2Q9GZP1 204 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 LHX5Q9H2C1 402 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 FBXO44Q9H4M3 255 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 CLMPQ9H6B4 373 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 KRT82Q9NSB4 513 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 COMMD8Q9NX08 183 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 IL37Q9NZH6 218 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 CCDC39Q9UFE4 941 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 NUDT5Q9UKK9 219 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 SSUH2Q9Y2M2 353 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 SLC27A6Q9Y2P4 619 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.72□□□□□ -1.17
VPS4A-203ENST00000564399 PCDHGA1Q9Y5H4 931 aa7.72□□□□□ -1.17
VPS4A-203ENST00000564399 FAM92AA1XBS5 289 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 PYCARD-AS1I3L0S3 204 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 CBX4O00257 560 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 MDM4O15151 490 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 ARHGAP6O43182 974 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 DFNA5O60443 496 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 PHACTR2O75167 634 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 SEMA4FO95754 770 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 BMP15O95972 392 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 ITGAVP06756 1048 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 C1SP09871 688 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 ABCB4P21439 1286 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 PRKCHP24723 683 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 CD27P26842 260 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 PLA2G4AP47712 749 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 PGFP49763 221 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 COPAP53621 1224 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 MFAP3P55082 362 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 MYL6P60660 151 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 DNAJC3Q13217 504 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 ENPP2Q13822 863 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 RTP5Q14D33 572 aa7.71□□□□□ -1.18
VPS4A-203ENST00000564399 KCNT1Q5JUK3 1230 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms