RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ADORA2AP29274 412 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 PDE1BQ01064 536 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 ROR2Q01974 943 aaKnown RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 PEX6Q13608 980 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 RBBP5Q15291 538 aaKnown RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 FAM91A1Q658Y4 838 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 RSPH3Q86UC2 560 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 MYLK4Q86YV6 388 aaPredicted RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 TRIM42Q8IWZ5 723 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 DEPDC1BQ8WUY9 529 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 ECSITQ9BQ95 431 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 TRIM4Q9C037 500 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 CYP4F11Q9HBI6 524 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 XAB2Q9HCS7 855 aaKnown RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 PICK1Q9NRD5 415 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 ZNF180Q9UJW8 692 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 COL11A1P12107 1806 aaPredicted RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 IGKV6D-21A0A0A0MT36 114 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 C2CD4BA6NLJ0 364 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 APOL1O14791 398 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 PDE5AO76074 875 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 ENDOD1O94919 500 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 CDC16Q13042 620 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 TNFAIP1Q13829 316 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 FAM47CQ5HY64 1035 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 MPZL3Q6UWV2 235 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 DENND5BQ6ZUT9 1274 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 NETO2Q8NC67 525 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 MINDY3Q9H8M7 445 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 DNAJC16Q9Y2G8 782 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 BRWD3Q6RI45 1802 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 SNNO75324 88 aaPredicted RBP13.66□□□□□ -0.22
CLN3-210ENST00000563874 CYP3A5P20815 502 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 CCNFP41002 786 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 FASTKD1Q53R41 847 aaKnown RBP13.66□□□□□ -0.22
CLN3-210ENST00000563874 CASC4Q6P4E1 433 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 KCNN1Q92952 543 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 ZNF778Q96MU6 729 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 BCO2Q9BYV7 579 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 A0A088AWK7 358 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 CILPO75339 1184 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 GSTA2P09210 222 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 RAB27AP51159 221 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 GBE1Q04446 702 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 PRKG1Q13976 671 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 SURF1Q15526 300 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 CCDC14Q49A88 953 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 DNAL1Q4LDG9 190 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 CFAP157Q5JU67 520 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 ZNF534Q76KX8 674 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 EBF3Q9H4W6 596 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 RPF1Q9H9Y2 349 aaKnown RBP13.66□□□□□ -0.22
CLN3-210ENST00000563874 IL1RAPL1Q9NZN1 696 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 HACL1Q9UJ83 578 aa13.66□□□□□ -0.22
CLN3-210ENST00000563874 LACTBL1A8MY62 500 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 B4GALT4O60513 344 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 SERPINA6P08185 405 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 TFE3P19532 575 aaPredicted RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 BSPRYQ5W0U4 402 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 LPCAT4Q643R3 524 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 JADE1Q6IE81 842 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 MAP7D3Q8IWC1 876 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 GSDMBQ8TAX9 411 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 FAM172AQ8WUF8 416 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 SIGLEC10Q96LC7 697 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 CDT1Q9H211 546 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 PCDH18Q9HCL0 1135 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 LOC100653049A0A140TA62 436 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 SDR42E2A6NKP2 422 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 SPDYE16A6NNV3 312 aaPredicted RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 TRDMT1O14717 391 aaKnown RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 RNASEH1O60930 286 aaKnown RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 KRT34O76011 436 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 IQCF3P0C7M6 154 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 CRHR1P34998 444 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 CPOXP36551 454 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 ATXN1P54253 815 aaKnown RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 OAZ1P54368 228 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 HIC1Q14526 733 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 VWA5B1Q5TIE3 1220 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 RASIP1Q5U651 963 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 IER5Q5VY09 327 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 DPY19L2Q6NUT2 758 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 ATG14Q6ZNE5 492 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 APLFQ8IW19 511 aaPredicted RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 MFN1Q8IWA4 741 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 SLC26A7Q8TE54 656 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 EBNA1BP2Q99848 306 aaKnown RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 SNRNP25Q9BV90 132 aaKnown RBP13.65□□□□□ -0.22
CLN3-210ENST00000563874 TSPAN16Q9UKR8 245 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 SOX13Q9UN79 622 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 ADAMTS5Q9UNA0 930 aa13.65□□□□□ -0.22
CLN3-210ENST00000563874 A0A1B0GVG6 124 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 GPR25O00155 361 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 ZMPSTE24O75844 475 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 DPEP1P16444 411 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 ICAM3P32942 547 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 GABRB2P47870 512 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 CLCN3P51790 818 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 NDST1P52848 882 aa13.65□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms