RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 HMBSP08397 361 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 ZNF18P17022 549 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 HOXA6P31267 233 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 CLCN1P35523 988 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 TNFRSF4P43489 277 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 ZNF445P59923 1031 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 MRPS21P82921 87 aaKnown RBP13.99□□□□□ -0.17
CLK3-213ENST00000563842 SATB1Q01826 763 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 PDCLQ13371 301 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 TRIP4Q15650 581 aaPredicted RBP13.99□□□□□ -0.17
CLK3-213ENST00000563842 SKOR2Q2VWA4 1001 aaPredicted RBP13.99□□□□□ -0.17
CLK3-213ENST00000563842 DPY19L2P1Q6NXN4 242 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 TPGS1Q6ZTW0 290 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 UNC45BQ8IWX7 931 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 SCUBE3Q8IX30 993 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 ZBTB44Q8NCP5 570 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 NELL1Q92832 810 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 FAM149B1Q96BN6 582 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 PCMTD1Q96MG8 357 aaPredicted RBP13.99□□□□□ -0.17
CLK3-213ENST00000563842 PHOX2BQ99453 314 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 NAA15Q9BXJ9 866 aaKnown RBP13.99□□□□□ -0.17
CLK3-213ENST00000563842 ACP6Q9NPH0 428 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 ARHGEF4Q9NR80 690 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 SLC8A2Q9UPR5 921 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 PTPRZ1P23471 2315 aaPredicted RBP13.99□□□□□ -0.17
CLK3-213ENST00000563842 LGALS16A8MUM7 142 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 E5RJQ4 531 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 NEDD8-MDP1E9PL57 170 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 TULP3O75386 442 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 GABBR2O75899 941 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 NCAM1P13591 858 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 TYRP14679 529 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 ZNF165P49910 485 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 UBXN1Q04323 297 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 NCAPHQ15003 741 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 HSF5Q4G112 596 aaPredicted RBP13.98□□□□□ -0.17
CLK3-213ENST00000563842 EFHC1Q5JVL4 640 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 NAIF1Q69YI7 327 aaPredicted RBP13.98□□□□□ -0.17
CLK3-213ENST00000563842 TSSK4Q6SA08 328 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 SYT13Q7L8C5 426 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 SLC47A2Q86VL8 602 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 DENND1CQ8IV53 801 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 ETFBKMTQ8IXQ9 262 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 CPXM2Q8N436 756 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 CAMKK1Q8N5S9 505 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 TMEM35BQ8NCS4 154 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 NEK11Q8NG66 645 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 RPLP0P6Q8NHW5 317 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 KCNV2Q8TDN2 545 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 IPO4Q8TEX9 1081 aaKnown RBP13.98□□□□□ -0.17
CLK3-213ENST00000563842 PPP1R13BQ96KQ4 1090 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 SERPINB11Q96P15 392 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 SPAG5Q96R06 1193 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 POPDC2Q9HBU9 364 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 SFMBT1Q9UHJ3 866 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 AJAP1Q9UKB5 411 aaPredicted RBP13.98□□□□□ -0.17
CLK3-213ENST00000563842 AGO1Q9UL18 857 aaKnown RBP13.98□□□□□ -0.17
CLK3-213ENST00000563842 R4GN57 208 aa13.98□□□□□ -0.17
CLK3-213ENST00000563842 CCDC163A0A0D9SF12 145 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 TBC1D3BA6NDS4 549 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 F8VZ95 297 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 K7EQS6 105 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 CACNG3O60359 315 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 CAVIN2O95810 425 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 LMNAP02545 664 aaKnown RBP13.97□□□□□ -0.17
CLK3-213ENST00000563842 KLKB1P03952 638 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 GLI1P08151 1106 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 TDGF1P13385 188 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 CYP11B1P15538 503 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 CNR2P34972 360 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 SLC6A11P48066 632 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 POLR2FP61218 127 aaKnown RBP13.97□□□□□ -0.17
CLK3-213ENST00000563842 YWHAZP63104 245 aaKnown RBP13.97□□□□□ -0.17
CLK3-213ENST00000563842 TPM4P67936 248 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 RING1Q06587 406 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 NNTQ13423 1086 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 E2F5Q15329 346 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 FILIP1LQ4L180 1135 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 NUGGCQ68CJ6 796 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 GRAMD4Q6IC98 578 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 C12orf40Q86WS4 652 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 ZNF677Q86XU0 584 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 ZDHHC17Q8IUH5 632 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 PASD1Q8IV76 773 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 NAT16Q8N8M0 369 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 MSANTD4Q8NCY6 345 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 CLEC4CQ8WTT0 213 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 ERGIC2Q96RQ1 377 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 IRX2Q9BZI1 471 aaPredicted RBP13.97□□□□□ -0.17
CLK3-213ENST00000563842 GANQ9H2C0 597 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 SYNCQ9H7C4 482 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 FAM207AQ9NSI2 230 aaPredicted RBP13.97□□□□□ -0.17
CLK3-213ENST00000563842 DNAJC17Q9NVM6 304 aaKnown RBP13.97□□□□□ -0.17
CLK3-213ENST00000563842 ASNSD1Q9NWL6 643 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 CYTH4Q9UIA0 394 aa13.97□□□□□ -0.17
CLK3-213ENST00000563842 CFAP54Q96N23 3096 aa13.96□□□□□ -0.17
CLK3-213ENST00000563842 EML5Q05BV3 1969 aa13.96□□□□□ -0.17
CLK3-213ENST00000563842 ZFHX2Q9C0A1 2572 aaPredicted RBP13.96□□□□□ -0.17
CLK3-213ENST00000563842 K7ESF4 209 aa13.96□□□□□ -0.17
CLK3-213ENST00000563842 PAPSS1O43252 624 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms