RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GRAP2O75791 330 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 OAZ2O95190 189 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 GAS8O95995 478 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 FLT3P36888 993 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 MATKP42679 507 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 TKTL1P51854 596 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 SLC25A11Q02978 314 aaKnown RBP9.31□□□□□ -0.92
VPS39-207ENST00000563692 HLTFQ14527 1009 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS39-207ENST00000563692 KRT81Q14533 505 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CASP8Q14790 479 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 PPP1R7Q15435 360 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 ATP13A4Q4VNC1 1196 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 FAM171A1Q5VUB5 890 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 KIAA0319Q5VV43 1072 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 DAB2IPQ5VWQ8 1189 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 KAZNQ674X7 775 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 SCYL2Q6P3W7 929 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 MFSD7Q6UXD7 560 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CD300LGQ6UXG3 332 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CLEC20AQ6ZU45 233 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 PAQR9Q6ZVX9 377 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 FAM35AQ86V20 835 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CEP57Q86XR8 500 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 JAMLQ86YT9 394 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 SPATA2LQ8IUW3 424 aaPredicted RBP9.31□□□□□ -0.92
VPS39-207ENST00000563692 PLCD3Q8N3E9 789 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CCHCR1Q8TD31 782 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 HASPINQ8TF76 798 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 TEKT4Q8WW24 435 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CASKIN2Q8WXE0 1202 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 EDAQ92838 391 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 SLCO2A1Q92959 643 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CAVIN3Q969G5 261 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 ACSF2Q96CM8 615 aaPredicted RBP9.31□□□□□ -0.92
VPS39-207ENST00000563692 HINFPQ9BQA5 517 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 TTPALQ9BTX7 342 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 DDX23Q9BUQ8 820 aaKnown RBP9.31□□□□□ -0.92
VPS39-207ENST00000563692 OXCT2Q9BYC2 517 aaPredicted RBP9.31□□□□□ -0.92
VPS39-207ENST00000563692 FUT8Q9BYC5 575 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 GPR62Q9BZJ7 368 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 FAM129AQ9BZQ8 928 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 POMKQ9H5K3 350 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 RXFP1Q9HBX9 757 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 C11orf16Q9NQ32 467 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CNGB3Q9NQW8 809 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 MAN1C1Q9NR34 630 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CHST7Q9NS84 486 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 TMEM51Q9NW97 253 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 ZNF446Q9NWS9 450 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 RRN3Q9NYV6 651 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 STAP1Q9ULZ2 295 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 NFU1Q9UMS0 254 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 DRG1Q9Y295 367 aaKnown RBP9.31□□□□□ -0.92
VPS39-207ENST00000563692 PDCD11Q14690 1871 aaKnown RBP9.31□□□□□ -0.92
VPS39-207ENST00000563692 SCN1AP35498 2009 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 TCRBV7S2A1N4TA0A589 114 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 F8W810 466 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 H7C4K7 107 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 NDC80O14777 642 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 RRP9O43818 475 aaKnown RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 C1RP00736 705 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 F9P00740 461 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 IGFBP6P24592 240 aaPredicted RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 TKTP29401 623 aaKnown RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 NOS2P35228 1153 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 CDKN2BP42772 138 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 PTGIRP43119 386 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 CARSP49589 748 aaKnown RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 ZXDAP98168 799 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 ATP11AP98196 1134 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 ADIGQ0VDE8 80 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 SMARCB1Q12824 385 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 KLF1Q13351 362 aaPredicted RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 TFDP2Q14188 446 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 SIX1Q15475 284 aaPredicted RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 TAF5Q15542 800 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 NFE2Q16621 373 aaPredicted RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 CDO1Q16878 200 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 SLC25A52Q3SY17 297 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 ERMARDQ5T6L9 678 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 DRICH1Q6PGQ1 229 aaPredicted RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 SND1Q7KZF4 910 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS39-207ENST00000563692 STRADAQ7RTN6 431 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 OTOP3Q7RTS5 596 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 GSTA5Q7RTV2 222 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 TAS1R1Q7RTX1 841 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 GPR149Q86SP6 731 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 VSIG1Q86XK7 387 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 SUGP1Q8IWZ8 645 aaKnown RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 RNF168Q8IYW5 571 aaPredicted RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 ARFGAP1Q8N6T3 406 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 BBOF1Q8ND07 529 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 AENQ8WTP8 325 aaKnown RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 FAM172AQ8WUF8 416 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 C1orf54Q8WWF1 131 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 IRGQQ8WZA9 623 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 SEC14L1Q92503 715 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 RAPGEF5Q92565 580 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 HSPH1Q92598 858 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 CENPIQ92674 756 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms