RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 MFSD7Q6UXD7 560 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 CHRDL2Q6WN34 429 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 SPOCD1Q6ZMY3 1216 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 SLC13A5Q86YT5 568 aaPredicted RBP10.58□□□□□ -0.72
SMG1-208ENST00000563448 CCDC50Q8IVM0 306 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 RNF139Q8WU17 664 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 TEKT4Q8WW24 435 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 RBM41Q96IZ5 413 aaKnown RBP10.58□□□□□ -0.72
SMG1-208ENST00000563448 LMAN2LQ9H0V9 348 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 TMPRSS4Q9NRS4 437 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.58□□□□□ -0.72
SMG1-208ENST00000563448 FZD10Q9ULW2 581 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 CHD9Q3L8U1 2897 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 SHROOM3Q8TF72 1996 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 TCRBV7S2A1N4TA0A589 114 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CTAGE15A4D2H0 777 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 I6L893 689 aaPredicted RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 RFXAPO00287 272 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 PER2O15055 1255 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 MSI1O43347 362 aaKnown RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 TBX18O95935 607 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 C1RP00736 705 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 F9P00740 461 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 LRG1P02750 347 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CTAGE8P0CG41 777 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 RALAP11233 206 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 GBP1P32455 592 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CDKN2BP42772 138 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 COPS2P61201 443 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 C2orf54Q08AI8 447 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 TAZQ16635 292 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 ADAT2Q7Z6V5 191 aaKnown RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 TMEM150AQ86TG1 271 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CTAGE6Q86UF2 777 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 ITIH5Q86UX2 942 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CTAGE4Q8IX94 777 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 ZDHHC14Q8IZN3 488 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 ZNF276Q8N554 614 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 KCTD6Q8NC69 237 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 MNS1Q8NEH6 495 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 PDZD8Q8NEN9 1154 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 SPATA4Q8NEY3 305 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 FAM71BQ8TC56 605 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 TIFAQ96CG3 184 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 LRRC3Q9BY71 257 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CCSER2Q9H7U1 834 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 MAN1C1Q9NR34 630 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 OLA1Q9NTK5 396 aaKnown RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.57□□□□□ -0.72
SMG1-208ENST00000563448 AP4E1Q9UPM8 1137 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 NR2E1Q9Y466 385 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 ASB3Q9Y575 518 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CHD7Q9P2D1 2997 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 NUP210Q8TEM1 1887 aaPredicted RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 hCG_1818297A0A087WSY0 165 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 ZNF840PA6NDX5 716 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 F11P03951 625 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 KRT10P13645 584 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 L1CAMP32004 1257 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 PTPN7P35236 360 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 CDH6P55285 790 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 SMAD3P84022 425 aaKnown RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 ADCY2Q08462 1091 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 EFEMP1Q12805 493 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 DPYSL3Q14195 570 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 SIX1Q15475 284 aaPredicted RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 PPM1LQ5SGD2 360 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 SND1Q7KZF4 910 aaKnown RBP eCLIP10.57□□□□□ -0.72
SMG1-208ENST00000563448 RSRC2Q7L4I2 434 aaKnown RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 RBM23Q86U06 439 aaKnown RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 TMC8Q8IU68 726 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 HS6ST3Q8IZP7 471 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 NTAN1Q96AB6 310 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 ZNF512Q96ME7 567 aaPredicted RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 KCTD15Q96SI1 283 aaPredicted RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 HEMGNQ9BXL5 484 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 AP1M1Q9BXS5 423 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 OSBPL8Q9BZF1 889 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 DHX35Q9H5Z1 703 aaKnown RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 IL21Q9HBE4 155 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 PCDH18Q9HCL0 1135 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 MTMR10Q9NXD2 777 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 TRPM5Q9NZQ8 1165 aa10.57□□□□□ -0.72
SMG1-208ENST00000563448 UXTQ9UBK9 157 aaPredicted RBP10.57□□□□□ -0.72
SMG1-208ENST00000563448 CCL16O15467 120 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 TLR5O60602 858 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 ZMYND10O75800 440 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 IL4RP24394 825 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 ADRA1BP35368 520 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 ITIH3Q06033 890 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 MMRN1Q13201 1228 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 KLF1Q13351 362 aaPredicted RBP10.56□□□□□ -0.72
SMG1-208ENST00000563448 PDK2Q15119 407 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 PPP2R5EQ16537 467 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 DPYSL2Q16555 572 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 ODF2Q5BJF6 829 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 TFDP3Q5H9I0 405 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 C10orf120Q5SQS8 335 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 PYROXD2Q8N2H3 581 aa10.56□□□□□ -0.72
SMG1-208ENST00000563448 NOA1Q8NC60 698 aaKnown RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms