RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IKBKGQ9Y6K9 419 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 ABHD14A-ACY1A0A1B0GW23 586 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 TCRBV7S2A1N4TA0A589 114 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 E7ESA3 106 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 PI4K2BG5E9Z4 385 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 H0YGN5 161 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 M0QYT0 321 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 TRDMT1O14717 391 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 ALOX15BO15296 676 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 BAIAP3O94812 1187 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 POMCP01189 267 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CALCAP01258 141 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 NCAM1P13591 858 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 KRT10P13645 584 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 IVDP26440 423 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CNTFP26441 200 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 IL1R2P27930 398 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 SSTR3P32745 418 aaPredicted RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 PPM1AP35813 382 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 KCNJ1P48048 391 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 LMAN1P49257 510 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 TUFMP49411 452 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 GLUD2P49448 558 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 TPI1P60174 286 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ADCY1Q08828 1119 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 TRIM32Q13049 653 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ORC1Q13415 861 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 IKBKEQ14164 716 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 SLC29A2Q14542 456 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 PAFAH1B3Q15102 231 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 CDO1Q16878 200 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ANO4Q32M45 955 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CCDC38Q502W7 563 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 BTBD8Q5XKL5 378 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 NUGGCQ68CJ6 796 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ASTLQ6HA08 431 aaPredicted RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 AADACL2Q6P093 401 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CNKSR3Q6P9H4 555 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ARHGEF18Q6ZSZ5 1173 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CYS1Q717R9 158 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ZNF771Q7L3S4 317 aaPredicted RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 PHLDB2Q86SQ0 1253 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CCDC25Q86WR0 208 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 DEFB106AQ8N104 65 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ZNF276Q8N554 614 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 PYROXD1Q8WU10 500 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 FATE1Q969F0 183 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 MTBPQ96DY7 904 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 SGSM3Q96HU1 749 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CSPG4P5Q96PW8 444 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ZIC5Q96T25 663 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 B3GNT5Q9BYG0 378 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ULBP1Q9BZM6 244 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ZCWPW1Q9H0M4 648 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CDC42EP4Q9H3Q1 356 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 SMOC2Q9H3U7 446 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 HIPK3Q9H422 1215 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 SSU72Q9NP77 194 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 CRTAC1Q9NQ79 661 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 TBC1D13Q9NVG8 400 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 DDIT4Q9NX09 232 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 CALCOCO1Q9P1Z2 691 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 LGALS13Q9UHV8 139 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 GGA2Q9UJY4 613 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 FBXW11Q9UKB1 542 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 SMG5Q9UPR3 1016 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 SCML2Q9UQR0 700 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 R3HDM2Q9Y2K5 976 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 NFS1Q9Y697 457 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 FRMPD3Q5JV73 1810 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 TDRD15B5MCY1 1934 aaKnown RBP7.79□□□□□ -1.16
VPS39-204ENST00000561818 TRIP11Q15643 1979 aa7.79□□□□□ -1.16
VPS39-204ENST00000561818 ATXN2Q99700 1313 aaKnown RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 SRCAPQ6ZRS2 3230 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 A0A0A0MRY4 1105 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 EEF2KO00418 725 aaKnown RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 MGEA5O60502 916 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 APOEP02649 317 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 SRGAP2BP0DMP2 458 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 TKTP29401 623 aaKnown RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 ADRA1BP35368 520 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 MAGEA4P43358 317 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 OR1G1P47890 313 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 ALDH7A1P49419 539 aaKnown RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 CXCR3P49682 368 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 DYNLT1P63172 113 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 BASP1P80723 227 aaKnown RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 DMTNQ08495 405 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 DNAJC3Q13217 504 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 PLD1Q13393 1074 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 LAMB3Q13751 1172 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 PRPSAP1Q14558 356 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 UAP1Q16222 522 aaPredicted RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 C15orf59Q2T9L4 293 aaPredicted RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 PPP6R3Q5H9R7 873 aaPredicted RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 KCNT1Q5JUK3 1230 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 TPGS2Q68CL5 300 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 LLGL2Q6P1M3 1020 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 MSANTD2Q6P1R3 559 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 TRAF7Q6Q0C0 670 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 161.5 ms