RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 MED10Q9BTT4 135 aa11.31□□□□□ -0.6
TPM1-227ENST00000560970 TMEM121BQ9BXQ6 578 aaPredicted RBP11.31□□□□□ -0.6
TPM1-227ENST00000560970 NACA2Q9H009 215 aa11.31□□□□□ -0.6
TPM1-227ENST00000560970 CCSER2Q9H7U1 834 aa11.31□□□□□ -0.6
TPM1-227ENST00000560970 GMIPQ9P107 970 aa11.31□□□□□ -0.6
TPM1-227ENST00000560970 CALCOCO1Q9P1Z2 691 aa11.31□□□□□ -0.6
TPM1-227ENST00000560970 MBD1Q9UIS9 605 aaPredicted RBP11.31□□□□□ -0.6
TPM1-227ENST00000560970 A0A0A0MRY4 1105 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 FAM92AA1XBS5 289 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 PMM2O15305 246 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 AP5Z1O43299 807 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 TLR5O60602 858 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 AFPP02771 609 aaKnown RBP11.3□□□□□ -0.6
TPM1-227ENST00000560970 CFIP05156 583 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 ZDHHC11BP0C7U3 371 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 IRF1P10914 325 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 CCDC130P13994 396 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 ERCC5P28715 1186 aaPredicted RBP11.3□□□□□ -0.6
TPM1-227ENST00000560970 RPL6Q02878 288 aaKnown RBP11.3□□□□□ -0.6
TPM1-227ENST00000560970 SLC23A3Q6PIS1 610 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 SLC36A4Q6YBV0 504 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 NUDT18Q6ZVK8 323 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 RABEPKQ7Z6M1 372 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 ARHGEF19Q8IW93 802 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 PGBD3Q8N328 593 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 UBR7Q8N806 425 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 FRMD1Q8N878 549 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 C12orf29Q8N999 325 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 SCAMP5Q8TAC9 235 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 KAT5Q92993 513 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 KCNK16Q96T55 309 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 SLC32A1Q9H598 525 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 THAP9Q9H5L6 903 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 CYP3A43Q9HB55 503 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 SPHK2Q9NRA0 654 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 SAMSN1Q9NSI8 373 aaKnown RBP11.3□□□□□ -0.6
TPM1-227ENST00000560970 FAM49BQ9NUQ9 324 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 COMMD8Q9NX08 183 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 DEC1Q9P2X7 70 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 DACH1Q9UI36 760 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 PILRBQ9UKJ0 227 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 ZMIZ1Q9ULJ6 1067 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.3□□□□□ -0.6
TPM1-227ENST00000560970 ITPR1Q14643 2758 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 FREM2Q5SZK8 3169 aa11.3□□□□□ -0.6
TPM1-227ENST00000560970 TBC1D3BA6NDS4 549 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 CACNG3O60359 315 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 AP1G2O75843 785 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 FGFR1OPO95684 399 aaKnown RBP11.29□□□□□ -0.6
TPM1-227ENST00000560970 GABRG2P18507 467 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 SPINK2P20155 84 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 ITPKAP23677 461 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 GOLGA8FQ08AF8 430 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 GOLGA8DPQ0D2H9 430 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 CUL2Q13617 745 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 STX1AQ16623 288 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 TPD52L1Q16890 204 aaPredicted RBP11.29□□□□□ -0.6
TPM1-227ENST00000560970 ANO4Q32M45 955 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 ZNF394Q53GI3 561 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 EMC10Q5UCC4 262 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 GRAMD4Q6IC98 578 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 KIAA1211LQ6NV74 962 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 UNC93AQ86WB7 457 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 FUKQ8N0W3 1084 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 CRYBG2Q8N1P7 616 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 KDF1Q8NAX2 398 aaPredicted RBP11.29□□□□□ -0.6
TPM1-227ENST00000560970 CCDC150Q8NCX0 1101 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 CEP76Q8TAP6 659 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 ZCCHC14Q8WYQ9 949 aaKnown RBP11.29□□□□□ -0.6
TPM1-227ENST00000560970 GATA6Q92908 595 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 SCNM1Q9BWG6 230 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 INTS2Q9H0H0 1204 aaKnown RBP11.29□□□□□ -0.6
TPM1-227ENST00000560970 FBXO44Q9H4M3 255 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 TLR8Q9NR97 1041 aaKnown RBP11.29□□□□□ -0.6
TPM1-227ENST00000560970 CISHQ9NSE2 258 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 TMEM74BQ9NUR3 256 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 DNAJC17Q9NVM6 304 aaKnown RBP11.29□□□□□ -0.6
TPM1-227ENST00000560970 IL37Q9NZH6 218 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 PCNX2A6NKB5 2137 aa11.29□□□□□ -0.6
TPM1-227ENST00000560970 PLXNA2O75051 1894 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 UPK3BL1B0FP48 263 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 UPK3BL2E5RIL1 263 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 NEDD8-MDP1E9PL57 170 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 P4HA2O15460 535 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 TRIM21P19474 475 aaKnown RBP11.28□□□□□ -0.6
TPM1-227ENST00000560970 NTSR1P30989 418 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 MTIF2P46199 727 aaKnown RBP11.28□□□□□ -0.6
TPM1-227ENST00000560970 ATXN3P54252 364 aaPredicted RBP11.28□□□□□ -0.6
TPM1-227ENST00000560970 RAD23BP54727 409 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 APBA1Q02410 837 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 TYRO3Q06418 890 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 DUOXA1Q1HG43 343 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 KLHL40Q2TBA0 621 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 MIIPQ5JXC2 388 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 EGFLAMQ63HQ2 1017 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 SASS6Q6UVJ0 657 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 CREBRFQ8IUR6 639 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 HDDC3Q8N4P3 179 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 NAT16Q8N8M0 369 aa11.28□□□□□ -0.6
TPM1-227ENST00000560970 SLC4A11Q8NBS3 891 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms