RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 KCTD20Q7Z5Y7 419 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 MORC1Q86VD1 984 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 SKAP1Q86WV1 359 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 LMO3Q8TAP4 145 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 HPS3Q969F9 1004 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 SPSB4Q96A44 273 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 PHF21BQ96EK2 531 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 CINPQ9BW66 212 aaPredicted RBP3.34□□□□□ -1.87
SPG11-222ENST00000560435 ZNF518BQ9C0D4 1074 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 ZNF556Q9HAH1 456 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 PLK2Q9NYY3 685 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.34□□□□□ -1.87
SPG11-222ENST00000560435 STEAP1Q9UHE8 339 aa3.34□□□□□ -1.87
SPG11-222ENST00000560435 LOC102723971A0A1B0GUV8 181 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 LDB3O75112 727 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 MBPP02686 304 aaPredicted RBP3.33□□□□□ -1.88
SPG11-222ENST00000560435 PARP1P09874 1014 aaKnown RBP3.33□□□□□ -1.88
SPG11-222ENST00000560435 ST6GAL1P15907 406 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 IDUAP35475 653 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 DLGAP5Q15398 846 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 KRT71Q3SY84 523 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 WASHC2DQ5SRD0 308 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 USP49Q70CQ1 688 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 UEVLDQ8IX04 471 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 ADGRF4Q8IZF3 695 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 OR56A3Q8NH54 315 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 C1GALT1C1Q96EU7 318 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 GATA5Q9BWX5 397 aaPredicted RBP3.33□□□□□ -1.88
SPG11-222ENST00000560435 C6orf106Q9H6K1 298 aaPredicted RBP3.33□□□□□ -1.88
SPG11-222ENST00000560435 A1CFQ9NQ94 594 aaKnown RBP3.33□□□□□ -1.88
SPG11-222ENST00000560435 VPS45Q9NRW7 570 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 MYO6Q9UM54 1294 aa3.33□□□□□ -1.88
SPG11-222ENST00000560435 SCN5AQ14524 2016 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 KIR2DS5A0A0G2JLQ3 304 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 A0A1B0GUV1 79 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 A0A1W2PPL8 197 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 MBD3L4A6NDZ8 208 aaPredicted RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 MBD3L3A6NE82 208 aaPredicted RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 ALG1L2C9J202 215 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 KIR2DS3K7RE56 304 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 PHGDHO43175 533 aaKnown RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 VCAM1P19320 739 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 TCEA1P23193 301 aaKnown RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 GALNSP34059 522 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 RFX2P48378 723 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 PTDSS1P48651 473 aaKnown RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 EIF4A1P60842 406 aaKnown RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 DDR1Q08345 913 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 FAM50AQ14320 339 aaKnown RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 SMTNL2Q2TAL5 461 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 INO80DQ53TQ3 878 aaPredicted RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 ATAT1Q5SQI0 421 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 HIST2H2BCQ6DN03 193 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 GRAMD1CQ8IYS0 662 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 C11orf44Q8N8P7 122 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 ZNF668Q96K58 619 aaPredicted RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 NUP88Q99567 741 aaPredicted RBP3.32□□□□□ -1.88
SPG11-222ENST00000560435 SPC25Q9HBM1 224 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 HIF1ANQ9NWT6 349 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 NCKIPSDQ9NZQ3 722 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 PCDHGB1Q9Y5G3 927 aa3.32□□□□□ -1.88
SPG11-222ENST00000560435 RPS10-NUDT3A0A1W2PQS6 291 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 H7C4K7 107 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 CA12O43570 354 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 AP1G1O43747 822 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 PIAS2O75928 621 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 HOXC6P09630 235 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 TMIGD3P0DMS9 266 aaPredicted RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 PKMP14618 531 aaKnown RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 EN2P19622 333 aaPredicted RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 COMPP49747 757 aaPredicted RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 CLCA4Q14CN2 919 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 IZUMO4Q1ZYL8 232 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 PIK3CD-AS1Q5SR53 167 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.31□□□□□ -1.88
SPG11-222ENST00000560435 MAML1Q92585 1016 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 SMAD5Q99717 465 aaKnown RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 WDR83Q9BRX9 315 aaKnown RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 SEZ6LQ9BYH1 1024 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 ASPSCR1Q9BZE9 553 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 TM6SF1Q9BZW5 370 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 DHX36Q9H2U1 1008 aaKnown RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 KCNG2Q9UJ96 466 aa3.31□□□□□ -1.88
SPG11-222ENST00000560435 HEMK1Q9Y5R4 338 aaPredicted RBP3.31□□□□□ -1.88
SPG11-222ENST00000560435 CLEC18AA5D8T8 446 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 SOCS5O75159 536 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 DDNO94850 711 aaPredicted RBP3.3□□□□□ -1.88
SPG11-222ENST00000560435 UMODP07911 640 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 KITP10721 976 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 KLRC1P26715 233 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 ART1P52961 327 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 ITGA8P53708 1063 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 ERVFC1-1P60608 527 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 DNASE1L3Q13609 305 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 ARHGEF7Q14155 803 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 CNGA3Q16281 694 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 KIF26BQ2KJY2 2108 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 KRTAP24-1Q3LI83 254 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 C6orf10Q5SRN2 563 aa3.3□□□□□ -1.88
SPG11-222ENST00000560435 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms